Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3279 and PP_3280 are separated by 121 nucleotidesPP_3280 and PP_3281 overlap by 8 nucleotidesPP_3281 and PP_3282 overlap by 8 nucleotidesPP_3282 and PP_3283 are separated by 2 nucleotides PP_3279: PP_3279 - phenylacetate-CoA ligase, at 3,713,194 to 3,714,513 _3279 PP_3280: PP_3280 - 3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase, at 3,714,635 to 3,715,855 _3280 PP_3281: PP_3281 - hydroxyphenylacetyl-CoA thioesterase, at 3,715,848 to 3,716,288 _3281 PP_3282: PP_3282 - 3-hydroxyadipyl-CoA dehydrogenase, at 3,716,281 to 3,717,798 _3282 PP_3283: PP_3283 - 1,2-epoxyphenylacetyl-CoA isomerase, at 3,717,801 to 3,718,592 _3283
Group Condition PP_3279 PP_3280 PP_3281 PP_3282 PP_3283
carbon source Phenylacetic (C) -7.2 -6.4 -3.2 -7.6 -6.4
carbon source Phenylacetic (C) -4.8 -3.7 -2.5 -4.5 -4.8
phage P. putida Sci small MOI 0.1 -0.7 -3.6 -0.3 +0.0 -1.3
phage P. putida PUT 7 MOI 1 -1.3 -0.2 -0.9 -0.6 -1.0
carbon source Myristic (C) -0.8 -1.5 -0.1 +0.1 -0.1
pH Growth at pH7 and (C) Trisodium citrate -0.1 -0.8 +0.1 -1.0 -0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 -1.2 -0.8 +0.2 -0.1
phage P. putida Sci Big MOI 0.1 -0.5 -0.2 -0.1 -0.0 -1.2
phage P. putida Sci small MOI 0.1 -0.6 -0.7 +0.6 -0.3 -0.8
nitrogen source nitrate (N) -0.3 -1.0 -0.3 -0.2 +0.2
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.2 -0.9 +0.1 +0.1 -0.5
nitrogen source D-2-Aminobutyric (N) -0.1 -0.9 +0.1 -0.1 -0.5
temperature shift Temperature shift 30_to_34; with MOPS +0.2 -0.9 -0.2 -0.0 -0.4
stress R2A with Fusaric 240 ug/mL -0.2 -0.5 -0.6 -0.2 +0.2
pH Growth at pH6 and (C) Trisodium citrate -0.1 -0.9 -0.5 +0.2 +0.1
nitrogen source Urea (N) -0.2 -0.9 -0.5 +0.2 +0.3
carbon source D-Glucose (C); with MOPS -0.1 -1.0 -0.3 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 -0.6 +0.5 -0.5 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.3 +0.0 -0.6 -0.7
nitrogen source nitrogen source nitrite 1mM -0.1 +0.5 +0.2 +0.1 -0.8
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.4 -0.7 +0.3 -0.2
pH pH 8 +0.3 -0.7 -0.3 +0.3 +0.6
nitrogen source NAG (N); with MOPS +0.4 +0.5 +0.1 -0.1 -0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.6 -0.3 -0.3 +0.3
stress Growth with Chloride 200 mM; with MOPS +0.0 +0.3 -0.6 +0.3 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +0.5 -0.7 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.4 -0.3 +0.6 +0.4 -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +0.3 -0.4 +0.3 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 +0.9 -0.1 +0.2 +0.3
nitrogen source D-2-Aminobutyric (N) +0.2 +0.8 +0.5 +0.2 +0.2
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