Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3274 and PP_3275 are separated by 15 nucleotidesPP_3275 and PP_3276 overlap by 14 nucleotidesPP_3276 and PP_3277 are separated by 8 nucleotidesPP_3277 and PP_3278 are separated by 25 nucleotides PP_3274: PP_3274 - ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit, at 3,709,320 to 3,710,396 _3274 PP_3275: PP_3275 - putative subunit of phenylacetate degradation enzyme, at 3,710,412 to 3,710,945 _3275 PP_3276: PP_3276 - ring 1,2-phenylacetyl-CoA epoxidase beta subunit, at 3,710,932 to 3,711,690 _3276 PP_3277: PP_3277 - ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit, at 3,711,699 to 3,711,980 _3277 PP_3278: PP_3278 - ring 1,2-phenylacetyl-CoA epoxidase alpha subunit, at 3,712,006 to 3,712,995 _3278
Group Condition PP_3274 PP_3275 PP_3276 PP_3277 PP_3278
carbon source Phenylacetic (C) -6.0 N.D. -7.3 -6.1 -5.8
carbon source Phenylacetic (C) -4.2 N.D. -4.5 -5.2 -3.5
phage P. putida Missley MOI 0.1 -0.3 N.D. -1.3 -0.3 -1.3
phage P. putida Sci Big MOI 0.1 +0.0 N.D. -0.4 -0.9 -1.6
carbon source acetate (C) -0.1 N.D. -1.0 -0.9 -0.5
carbon source DL-3-Hydroxybutyric (C) -0.5 N.D. -0.5 -1.2 -0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.2 N.D. -0.9 -1.2 -0.6
carbon source D-Glucose (C) -0.0 N.D. -1.8 -0.2 -0.4
nitrogen source NAG (N); with MOPS +0.2 N.D. -0.4 -1.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. -0.4 -0.7 -0.8
temperature Growth at 30C; with MOPS +0.1 N.D. -0.5 -0.4 -0.8
stress Growth with Chloride 500 mM +0.0 N.D. -0.3 -0.4 -1.0
toxin pUC18_phdP1_pSU18T_docP1 -0.4 N.D. -0.4 -0.8 +0.1
temperature shift Temperature shift 30_to_34; with MOPS +0.1 N.D. -0.4 -0.9 -0.3
stress Growth with Chloride 500 mM +0.2 N.D. -0.9 -0.8 +0.0
temperature shift Temperature shift 30_to_25; with MOPS +0.2 N.D. -0.0 -1.4 -0.3
stress Growth with Chloride 500 mM; with MOPS +0.2 N.D. -0.8 -0.6 -0.2
carbon source Myristic (C) -0.6 N.D. -0.0 -1.0 +0.3
temperature shift Temperature shift 30_to_25 +0.2 N.D. -0.6 -0.6 -0.3
phage P. putida PUT 7 MOI 1 +0.0 N.D. -1.9 +0.5 +0.3
nitrogen source nitrate (N) +0.3 N.D. -0.9 -0.2 -0.4
pH Growth at pH9 and (C) D-Glucose +0.3 N.D. -0.7 -0.3 -0.3
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.4 N.D. +0.4 -0.7 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.7 N.D. +0.6 -0.1 -0.5
carbon source Valerolactone (C) -0.1 N.D. -0.5 +0.6 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 N.D. +0.5 +0.1 -1.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 N.D. -0.5 +0.4 +0.2
nitrogen source 2,6-diaminopimelic (N) -0.2 N.D. -0.8 +0.7 -0.0
carbon source ferulate (C); with MOPS +0.4 N.D. +0.3 -0.7 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 N.D. +0.5 -0.1 +0.6
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