Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5597	PP_3270	PP_3271	PP_3272	PP_3273
carbon source	Phenylacetic (C)	-0.1	-6.2	-2.1	-6.5	-3.8
carbon source	Phenylacetic (C)	-0.1	-4.8	-1.8	-3.5	-3.5
phage	P. putida Sci Big MOI 0.1	-5.5	+0.1	-0.1	-0.3	+0.0
phage	P. putida PUT 7 MOI 1	-1.2	-0.5	-0.4	-0.2	-1.0
phage	P. putida Missley MOI 0.1	-1.2	-0.1	-0.7	-0.4	-0.1
phage	P. putida Sci small MOI 0.1	-1.0	-0.1	-0.9	-0.1	-0.2
carbon source	L-Phenylalanine 5 mM (C)	-1.7	-0.0	-0.1	+0.0	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.0	-0.2	-0.1	-0.2	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.2	-0.2	-0.1	-0.2	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-1.3	-0.1	-0.1	-0.1	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.9	+0.0	+0.1	-0.2	-0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	-0.2	+0.1	-0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.4	+0.2	-0.2	-0.2	+0.1
phage	P. put South MOI 10	-1.3	+0.2	-0.1	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.5	+0.1	-0.3	+0.1	+0.2
stress	Growth with Chloride 500 mM; with MOPS	-1.3	-0.2	+0.0	-0.1	+0.2
pH	Growth at pH9 and (C) D-Glucose	-0.8	-0.2	-0.3	-0.2	+0.5
pH	Growth at pH6 and (C) Trisodium citrate	-1.3	+0.1	-0.2	-0.2	+0.6
carbon source	Myristic (C)	+0.5	+0.1	+0.1	-0.2	-0.8
stress	R2A with Fusaric 240 ug/mL	+0.7	-0.4	-0.1	-0.1	-0.4
pH	Growth at pH6 and (C) D-Glucose	-0.8	-0.1	+0.2	+0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	-0.1	-0.2	+0.0	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	+0.1	-0.3	+0.3	-0.5
temperature	Growth at 25C	+0.9	-0.4	+0.2	+0.1	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+0.6	-0.0	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.0	-0.2	-0.1	+0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.2	-0.4	-0.1	+0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	-0.1	+0.1	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.4	+0.1	+0.3	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.5	+0.3	+0.1	+0.0	-0.1