Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3262	PP_5595	PP_3263	PP_3264	PP_3265
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	N.D.	+0.1	-0.4	-0.7	-1.6
pH	Growth at pH7 and (C) Trisodium citrate	N.D.	-0.7	+0.1	-0.1	-1.8
phage	P. putida Missley MOI 0.1	N.D.	-0.5	-0.4	-0.1	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-2	N.D.	-0.2	+0.1	-0.1	-1.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	N.D.	+0.0	-0.2	-1.0	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	N.D.	-0.5	+0.1	-0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.3	-0.2	-0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	N.D.	-0.5	+0.2	-0.3	-1.0
nitrogen source	NAG (N); with MOPS	N.D.	+0.1	-0.2	-0.3	-1.1
phage	P. putida PUT 7 MOI 1	N.D.	-0.9	+0.2	-0.4	-0.3
pH	Growth at pH9 and (C) Trisodium citrate	N.D.	+0.3	-0.3	-0.2	-1.0
carbon source	carbon source D-Glucose 55.5 mM	N.D.	+0.1	+0.0	+0.2	-1.4
carbon source	Valerolactone (C)	N.D.	+0.0	+0.3	-0.0	-1.4
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	+0.2	+0.1	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	N.D.	+0.3	-0.2	-0.2	-0.9
nitrogen source	D-2-Aminobutyric (N)	N.D.	-0.6	-0.1	-0.8	+0.6
pH	pH 6	N.D.	-0.3	+0.1	+0.4	-0.8
pH	Growth at pH7 and (C) Trisodium citrate	N.D.	+0.5	+0.3	+0.6	-1.8
pH	pH 7	N.D.	+0.1	-0.4	+0.6	-0.7
carbon source	D-Glucose (C)	N.D.	+0.2	-0.3	+0.6	-0.7
pH	Growth at pH7 and (C) Trisodium citrate	N.D.	-0.5	+0.1	-0.3	+0.9
temperature shift	Temperature shift 10_to_30; with MOPS	N.D.	+0.2	-0.1	-0.6	+0.8
pH	Growth at pH6 and (C) D-Glucose	N.D.	+0.2	-0.5	-0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.1	-0.3	-0.5	+1.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	-0.4	+0.3	+1.0
temperature shift	Temperature shift 30_to_4	N.D.	-0.5	+0.0	+0.2	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.5	+0.1	+0.4	+1.0
temperature shift	Temperature shift 30_to_21; with MOPS	N.D.	-0.3	+0.4	-0.4	+1.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+0.4	+0.6	-0.1
nitrogen source	nitrogen source nitrite 1mM	N.D.	+0.6	+0.3	+0.4	+0.4