Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 1005 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3252	PP_3253	PP_3254	PP_3255	PP_3256
phage	P. putida Missley MOI 0.1	-0.2	-0.2	+0.4	-0.7	-3.2
phage	P. putida Sci small MOI 0.1	+0.2	-0.7	-1.9	-0.1	-1.2
phage	P. putida PUT 7 MOI 1	+0.0	+0.1	-1.4	-0.7	-0.5
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-0.3	-0.2	-0.7	-0.3	-0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.0	+0.1	-0.6	-0.6	-0.5
phage	P. putida Sci Big MOI 0.1	-0.3	-0.2	-0.1	-0.1	-0.7
temperature	Growth at 30C; with MOPS	-0.2	-0.5	-0.2	-0.2	-0.3
pH	Growth at pH7 and (C) Trisodium citrate	+0.2	+0.2	-0.1	-1.0	-0.6
carbon source	Crotonic (C)	-0.1	-0.6	-0.1	-0.5	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.2	+0.3	-0.2	-0.5	-0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	+0.4	-0.6	+0.0	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	+0.3	-0.2	+0.1	-0.4	-0.6
pH	Growth at pH7 and (C) D-Glucose	-0.2	+0.2	-0.6	+0.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2	-0.1	+0.4	-0.4	-0.5
nitrogen source	Hydantoin (N)	+0.0	+0.4	-0.6	+0.2	-0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.4	+0.1	-1.0	-0.1	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	-0.2	+0.8	-0.5	-0.2
carbon source	3-Methyl-2-Oxobutanoic Acid (C)	-0.0	-0.0	+0.7	-0.2	-0.5
pH	Growth at pH8 and (C) Trisodium citrate	+0.1	+0.3	-0.4	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.1	+0.3	-0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.5	+0.1	+0.1	+0.4
carbon source	carbon source 4-vinylphenol 0.1 mM	-0.2	-0.3	+0.5	+0.4	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	-0.4	+0.5	-0.0	+0.7
pH	pH 8	+0.0	-0.1	+0.2	-0.3	+1.0
pH	pH 4	-0.1	-0.3	+0.0	+0.2	+1.0
pH	Valerolactone (C) pH 6.5	-0.2	+0.4	+0.6	+0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.5	+0.8	-0.0	-0.1
nitrogen source	Ammonium chloride (N)	+0.2	+0.2	+0.6	-0.1	+0.3
pH	pH 9	-0.0	+0.0	+0.3	+0.6	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+0.0	+0.8	+0.5	+0.4