Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3246	PP_3247	PP_3248	PP_3249	PP_3250
phage	P. putida Missley MOI 0.1	-0.1	-3.3	-0.6	-0.9	-0.1
carbon source	3-methyl-1-butanol (C)	-0.1	-0.1	-3.9	-0.3	-0.1
carbon source	3-methyl-1-butanol (C)	+0.3	-0.1	-4.1	-0.2	-0.1
nitrogen source	nitrogen source nitrate 5mM	-0.1	+0.1	-3.6	-0.1	-0.3
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2	-0.0	-2.4	-0.8	+0.1
nitrogen source	nitrogen source nitrite 1mM	-0.1	+0.6	-3.1	-0.3	-0.1
nitrogen source	nitrogen source nitrate 20mM	+0.2	-0.3	-2.6	-0.1	+0.1
carbon source	Decanoic (C)	-0.1	-0.1	-2.6	+0.1	+0.0
carbon source	3-Methyl-2-Oxobutanoic Acid (C)	-0.3	+0.1	-2.4	+0.1	-0.2
nitrogen source	nitrogen source nitrate 20mM	+0.1	-0.7	-2.4	+0.5	-0.1
carbon source	Butyl stearate (C)	+0.0	+0.4	-2.9	+0.1	-0.2
carbon source	Octanoic (C)	-0.1	+0.3	-2.6	+0.2	-0.0
nitrogen source	nitrogen source nitrite 0.5mM	+0.2	-0.6	-2.0	+0.5	-0.2
phage	P. putida Sci small MOI 0.1	-0.1	-1.9	+0.5	-0.2	-0.3
carbon source	Tween 20 (C)	+0.2	+0.2	-2.6	+0.3	-0.0
carbon source	Hexanoic (C)	-0.0	+0.6	-2.3	+0.1	-0.0
nitrogen source	2,6-diaminopimelic (N)	+0.3	-1.2	+1.9	-0.1	-0.1
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.0	-0.6	+2.0	-0.2	-0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO.	-0.2	-0.8	+2.0	+0.3	-0.1
carbon source	carbon source 4-vinylphenol 0.01 mM	+0.2	-0.5	+1.8	+0.1	-0.5
carbon source	3-Hydroxydecanoic (C)	-0.0	-1.2	+2.6	+0.0	+0.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.1	-0.6	+2.4	-0.2	-0.0
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.2	+0.7	+1.5	-0.5	-0.2
pH	Valerolactone (C) pH 6.5	-0.1	-0.6	+2.5	+0.1	-0.1
pH	pH 6	+0.4	+0.3	+2.0	-0.2	-0.1
reactor	48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO.	+0.2	-0.6	+2.8	-0.1	+0.1
micoeukaryotes	C.elegans, mixed culture-2	+1.6	+0.2	+0.1	+0.5	+0.4
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-0.0	+0.3	+2.9	+0.3	+0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+1.7	+0.9	+0.3	+0.5	+0.5
nitrogen source	2,6-diaminopimelic (N)	+0.2	+1.0	+2.1	+0.5	+0.1