Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_5592 and PP_3241 are separated by 8 nucleotidesPP_3241 and PP_3242 are separated by 152 nucleotidesPP_3242 and PP_3243 are separated by 42 nucleotidesPP_3243 and PP_3244 are separated by 17 nucleotides PP_5592: PP_5592 - conserved protein of unknown function, at 3,676,085 to 3,676,336 _5592 PP_3241: PP_3241 - conserved exported protein of unknown function, at 3,676,345 to 3,676,845 _3241 PP_3242: PP_3242 - GGDEF domain protein, at 3,676,998 to 3,678,566 _3242 PP_3243: PP_3243 - Acetyltransferase, GNAT family, at 3,678,609 to 3,679,118 _3243 PP_3244: PP_3244 - Magnesium transporter, MgtC family, at 3,679,136 to 3,679,849 _3244
Group Condition PP_5592 PP_3241 PP_3242 PP_3243 PP_3244
nitrogen source Propandiamine (N) -0.1 -0.9 +0.1 -3.1 -5.4
nitrogen source 2,6-diaminopimelic (N) -0.0 -3.9 -0.1 -1.5 -2.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.3 -5.0 -0.1 -2.6 +0.0
pH pH 5 +0.0 -2.7 -0.0 -0.8 -4.4
nitrogen source Propandiamine (N) +0.2 -0.7 -0.2 -1.0 -6.1
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 +1.0 +0.2 -1.9 -6.9
micoeukaryotes C.elegans, mixed culture-2 +0.2 -1.0 +0.2 -1.8 -4.8
phage PUT 8 MOI 1 -0.1 -5.7 -0.3 -0.7 -0.4
micoeukaryotes Tetrahymena sp., Mixed culture-1 +0.0 +0.7 +0.2 -0.5 -7.2
phage P. putida Sci small MOI 0.1 -0.4 -4.1 -0.3 -0.8 -0.6
pH Growth at pH6 and (C) Trisodium citrate -0.3 -5.5 +0.1 +0.0 -0.4
temperature shift Temperature shift 30_to_10; with MOPS +0.0 -5.7 +0.2 -0.3 -0.1
phage PUT8 MOI 0.1 -0.1 -5.7 -0.0 -0.0 +0.2
carbon source ferulate (C); with MOPS -0.4 -5.4 -0.0 +0.7 -0.0
carbon source carbon source D-Glucose 55.5 mM +0.4 -0.0 +0.2 -1.5 -4.1
pH D-Glucose (C) pH 6.5 -0.2 -3.4 +0.0 -1.2 -0.1
carbon source D-Glucose (C); with MOPS +0.1 -5.8 +0.1 +0.6 +0.3
pH Growth at pH6 and (C) Trisodium citrate -0.2 -1.1 -0.0 -2.6 -0.8
carbon source carbon source Bisabolene 48.9 mM +0.0 -1.0 +0.1 +0.3 -4.0
carbon source carbon source 2-Deoxy-D-glucose 100 mM +0.1 -1.8 +0.1 -0.2 -2.8
micoeukaryotes C.elegans, mixed culture-1 +0.0 +0.6 +0.2 -1.4 -3.9
carbon source D-Galacturonic Acid (C) +0.4 -1.0 -0.1 -1.2 -2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 -3.5 +0.0 +0.3 -1.2
pH pH 6 +0.3 -0.9 +0.1 -0.3 -3.2
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.0 -0.3 +0.3 -0.4 -3.6
carbon source 2,3-Butanediol (C) +0.3 +0.3 +0.1 -1.0 -3.7
micoeukaryotes Acanthamoeba sp., muxed culture-1 +0.1 +0.2 +0.3 +0.1 -4.2
carbon source carbon source Glycerol 108.6 mM +0.1 +1.1 +0.0 -0.2 -4.3
carbon source carbon source Bisabolol 45 mM -0.1 +0.9 -0.2 +0.2 -3.7
carbon source carbon source 2-Deoxy-D-glucose 10 mM +0.2 +1.4 -0.1 +0.4 -2.9
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