Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3238	PP_3239	PP_3240	PP_5592	PP_3241
phage	PUT8 MOI 0.1	-0.0	-1.8	N.D.	-0.1	-5.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.8	-6.5	N.D.	-0.3	+0.9
nitrogen source	D-2-Aminobutyric (N)	-0.2	-2.1	N.D.	-0.4	-3.4
temperature shift	Temperature shift 30_to_10; with MOPS	-0.1	+0.0	N.D.	+0.0	-5.7
carbon source	ferulate (C); with MOPS	+0.3	-0.1	N.D.	-0.4	-5.4
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	+0.5	N.D.	-0.3	-5.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.2	+0.0	N.D.	-0.3	-5.0
carbon source	D-Glucose (C); with MOPS	+0.2	+0.2	N.D.	+0.1	-5.8
phage	PUT 8 MOI 1	-0.3	+1.0	N.D.	-0.1	-5.7
nitrogen source	2,6-diaminopimelic (N)	-0.4	-0.5	N.D.	-0.0	-3.9
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	-1.2	N.D.	+0.1	-3.2
nitrogen source	Urea (N); with MOPS	+0.1	-1.5	N.D.	-0.3	-2.6
pH	Growth at pH9 and (C) Trisodium citrate	+0.8	-4.0	N.D.	-0.6	-0.4
nitrogen source	no extra (N); with MOPS	+0.2	-2.0	N.D.	+0.2	-2.6
pH	D-Glucose (C) pH 6.5	+0.1	-0.4	N.D.	-0.2	-3.4
carbon source	D-Glucose (C)	-0.0	-0.3	N.D.	-0.1	-3.3
phage	P. putida Sci small MOI 0.1	+0.7	+0.1	N.D.	-0.4	-4.1
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-0.8	-0.2	N.D.	-0.0	-2.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-1.0	N.D.	-0.1	-2.3
pH	Growth at pH6 and (C) D-Glucose	-0.2	-0.5	N.D.	-0.3	-2.5
nitrogen source	nitrate (N)	-0.3	-0.3	N.D.	-0.5	-2.4
temperature shift	Temperature shift 30_to_21; with MOPS	+0.0	-2.0	N.D.	-0.2	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.1	N.D.	+0.2	-3.5
stress	R2A with Fusaric 240 ug/mL	-0.3	-0.7	N.D.	+0.3	-2.2
carbon source	DL-3-Hydroxybutyric (C)	+0.3	-0.8	N.D.	-0.3	-2.1
pH	pH 5	+0.5	-0.5	N.D.	+0.0	-2.7
carbon source	ferulate (C); with MOPS	+0.5	-0.6	N.D.	+0.3	-2.7
nitrogen source	nitrogen source nitrite 0.5mM	+0.4	+1.0	N.D.	-0.2	-3.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.5	+0.5	N.D.	-0.2	+1.6
phage	P. putida Sci Big MOI 0.1	-0.5	+1.8	N.D.	-0.4	+0.6