Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3235 and PP_3236 are separated by 198 nucleotidesPP_3236 and PP_3237 are separated by 160 nucleotidesPP_3237 and PP_3238 are separated by 139 nucleotidesPP_3238 and PP_3239 are separated by 231 nucleotides PP_3235: PP_3235 - conserved protein of unknown function, at 3,671,950 to 3,672,342 _3235 PP_3236: PP_3236 - putative Lipoprotein OprI, at 3,672,541 to 3,672,792 _3236 PP_3237: PP_3237 - Universal stress protein family, at 3,672,953 to 3,673,843 _3237 PP_3238: PP_3238 - putative Transcriptional regulator PyrR, at 3,673,983 to 3,674,555 _3238 PP_3239: PP_3239 - putative cointegrate resolution protein T Tn4652, at 3,674,787 to 3,675,773 _3239
Group Condition PP_3235 PP_3236 PP_3237 PP_3238 PP_3239
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 N.D. -0.4 -0.8 -6.5
pH Growth at pH9 and (C) Trisodium citrate -0.3 N.D. -0.3 +0.8 -4.0
pH Growth at pH6 and (C) D-Glucose -0.1 N.D. -1.7 +0.1 -2.2
nitrogen source D-2-Aminobutyric (N) +0.2 N.D. -0.6 -0.2 -2.1
nitrogen source Urea (N) -0.3 N.D. +0.1 +0.0 -2.5
stress MOPS minimal media_Glucose20mM with PHB-HV-HH 0.1 mg/mL +0.1 N.D. -0.6 -0.5 -1.6
phage P. putida Missley MOI 0.1 +0.3 N.D. -0.5 -0.8 -1.5
pH Growth at pH7 and (C) Trisodium citrate -0.2 N.D. -0.7 -0.3 -1.2
phage P. putida South MOI 10 -0.5 N.D. -0.2 -0.5 -1.0
nitrogen source NAG (N); with MOPS -0.3 N.D. -0.7 +0.2 -1.4
phage PUT8 MOI 0.1 +0.3 N.D. -0.4 -0.0 -1.8
nitrogen source no extra (N); with MOPS +0.1 N.D. -0.1 +0.2 -2.0
carbon source Mucic (C) +0.2 N.D. +0.2 -0.1 -2.1
no stress control Growth with no stress +0.3 N.D. +0.2 -1.0 -1.3
nitrogen source nitrogen source Ammonium chloride 20mM +0.3 N.D. +0.2 -0.2 -2.0
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -0.3 N.D. +0.2 +0.7 -2.1
temperature shift Temperature shift 30_to_21; with MOPS +0.1 N.D. +0.4 +0.0 -2.0
carbon source Trisodium citrate (C) +0.6 N.D. +0.1 +0.2 -2.2
carbon source Valerolactone (C) +0.2 N.D. -0.4 +0.4 -1.5
temperature Growth at 30C; with MOPS +0.1 N.D. -1.2 +0.4 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 N.D. +0.2 -1.5 +0.5
nitrogen source Urea (N); with MOPS +0.5 N.D. +0.2 +0.1 -1.5
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.1 N.D. +0.9 -0.1 -1.2
pH pH 8 +0.3 N.D. -0.4 +0.6 -1.0
nitrogen source NAG (N); with MOPS +0.2 N.D. -0.4 -0.7 +0.9
pH Growth at pH7 and (C) Trisodium citrate -0.7 N.D. +0.7 -0.4 +0.5
phage P. putida Sci Big MOI 0.1 +0.2 N.D. -1.0 -0.5 +1.8
carbon source 4-Aminobutyric 10 mM (C) -0.5 N.D. +0.7 +0.3 +0.7
carbon source carbon source Bisabolene 48.9 mM -0.4 N.D. +0.1 +1.1 +0.9
carbon source carbon source Glycerol 108.6 mM +0.2 N.D. +0.3 +1.1 +0.7
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