Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3226	PP_3227	PP_3228	PP_3229	PP_3230
nitrogen source	NAG (N); with MOPS	-0.3	-0.6	-0.5	-0.4	-0.8
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.1	-0.9	-0.6	-0.1	-0.6
nitrogen source	nitrogen source nitrite 1mM	-0.7	-0.6	-0.4	-0.3	-0.2
phage	P. putida Sci small MOI 0.1	-0.2	-0.4	-1.1	-0.1	-0.1
carbon source	L-tyrosine 5 mM (C)	-0.2	-0.3	-0.9	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.1	-0.3	-0.0	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.8	+0.7	-0.5	-0.1	-1.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.4	-1.3	-0.9	+0.2	-0.0
phage	P. putida Sci small MOI 0.1	+0.1	-0.8	-1.0	+0.2	+0.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.1	-1.5	-0.3	+0.2	+0.3
nitrogen source	nitrite (N)	+0.0	-1.4	+0.0	-0.3	+0.2
nitrogen source	Urea (N)	+0.1	-1.2	-0.6	-0.3	+0.6
phage	PUT8 MOI 0.1	-0.7	-0.3	+0.4	-0.3	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.3	-1.1	-0.0	-0.2	+0.5
stress	Growth with Chloride 500 mM; with MOPS	-0.4	+0.4	-0.5	-0.4	-0.2
nitrogen source	Ammonium chloride (N)	+0.1	+0.4	-0.9	-0.1	-0.6
temperature shift	Temperature shift 30_to_21; with MOPS	+0.2	+0.3	-1.3	-0.3	+0.1
carbon source	butyrate (C)	-0.9	-0.6	+0.2	-0.0	+0.5
pH	Valerolactone (C) pH 6.5	-1.3	+0.0	+0.4	+0.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.1	-0.3	+0.2	+0.5	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	-1.6	+0.5	+0.0	+0.4
temperature shift	Temperature shift 30_to_21; with MOPS	+0.1	-1.8	+0.7	+0.1	+0.6
pH	Growth at pH7 and (C) D-Glucose	-0.9	+0.7	-0.2	+0.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.3	+1.2	-0.0	-0.5
carbon source	ferulate (C); with MOPS	-0.7	+0.9	+0.0	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.1	+0.5	-0.5	-0.9
pH	pH 6	+0.3	-0.9	+0.6	-0.1	+0.6
nitrogen source	D-2-Aminobutyric (N)	+0.5	-0.5	+0.6	+0.3	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.7	-0.1	-0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.1	+0.5	+0.8	+0.2	+0.2