Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3219	PP_3220	PP_3221	PP_3222	PP_3223
carbon source	Valerolactone (C)	-0.5	-0.3	-0.3	-0.3	-0.2
phage	PUT8 MOI 0.1	-0.1	-0.5	-0.4	-0.2	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	+0.2	-0.1	-0.6	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.1	-0.9	-0.6	+0.1
temperature	Growth at 30C; with MOPS	-0.1	+0.2	-1.0	+0.2	-0.3
phage	P. putida South MOI 10	-0.4	+0.3	-0.5	-0.3	+0.1
carbon source	Nonanoic (C)	-0.1	-0.6	-0.2	-0.2	+0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.5	+0.2	-1.1	+0.4	+0.2
phage	P. putida Sci small MOI 0.1	+0.0	+0.2	-0.4	+0.1	-0.6
nitrogen source	2,6-diaminopimelic (N)	-0.0	+0.5	-1.1	+0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.1	-0.8	+0.7	+0.0
pH	Growth at pH7 and (C) D-Glucose	-0.2	-0.6	+0.7	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.3	-0.4	+0.4	+0.3	-0.4
carbon source	ferulate (C); with MOPS	-0.5	+0.4	-0.5	-0.0	+0.1
nitrogen source	NAG (N); with MOPS	-0.5	+0.4	-0.5	+0.1	+0.0
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	-0.1	-0.5	+0.5	+0.1
temperature	Growth at 25C	-0.2	-0.4	+0.5	+0.2	-0.3
r2a control	R2A control	+0.3	+0.1	-0.7	+0.3	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.3	-0.4	+0.2	+0.1
phage	P. putida Sci small MOI 0.1	-0.4	+0.5	+0.5	-0.3	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	-0.5	+0.4	+0.3	+0.3
no stress control	Growth with no stress	-0.2	-0.4	+0.5	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.2	-0.7	+0.8	+0.3	+0.1
nitrogen source	nitrogen source nitrite 1mM	-0.1	+0.6	-0.6	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.4	+0.5	+0.2	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	-0.3	-0.1	+0.6	+0.5
r2a control	R2A control	+0.6	-0.1	-0.2	+0.5	+0.0
phage	P. putida Missley MOI 0.1	+0.1	+0.4	-0.4	+0.5	+0.3
carbon source	1,3-Butandiol (C)	+0.1	+0.4	+0.5	-0.2	+0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.3	+0.9	+0.1	+0.2