Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3207	PP_3208	PP_3209	PP_3210	PP_3211
phage	PUT 8 MOI 1	-0.1	+0.3	-0.2	N.D.	-6.3
stress	Growth with Chloride 500 mM	-0.2	-0.5	-0.2	N.D.	-0.8
phage	P. putida Sci Big MOI 0.1	-0.7	-0.2	-0.6	N.D.	-0.1
stress	R2A with Fusaric 480 ug/mL	-0.2	-0.0	-0.4	N.D.	-1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.2	-0.2	-0.3	N.D.	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.2	+0.2	N.D.	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.0	-0.0	-0.5	N.D.	-1.0
pH	Growth at pH9 and (C) Trisodium citrate	-0.4	-0.3	+0.3	N.D.	-1.0
nitrogen source	2,6-diaminopimelic (N)	-0.2	+0.4	+0.1	N.D.	-1.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM	-0.5	-0.1	+0.3	N.D.	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.2	+0.5	N.D.	-1.4
nitrogen source	NAG (N); with MOPS	+0.1	-0.1	+0.2	N.D.	-1.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	+0.1	N.D.	-1.0
phage	P. putida PUT 7 MOI 1	+0.2	-0.7	-0.5	N.D.	+0.1
carbon source	Valeric (C)	+0.3	-0.1	+0.2	N.D.	-1.4
pH	Growth at pH6 and (C) D-Glucose	-0.1	-0.4	+0.3	N.D.	-0.7
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.2	+0.2	-0.5	N.D.	-0.6
temperature shift	Temperature shift 30_to_25; with MOPS	-0.6	+0.1	+0.4	N.D.	-0.5
r2a control	R2A control	+0.3	+0.0	+0.3	N.D.	-1.1
carbon source	D-Glucose (C); with MOPS	+0.2	+0.1	+0.4	N.D.	-1.1
phage	P. put South MOI 10	+0.3	+0.1	+0.2	N.D.	-0.9
phage	P. putida Sci small MOI 0.1	+0.1	-0.2	-0.8	N.D.	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.4	+0.1	-0.4	N.D.	+0.8
stress	Growth with Chloride 200 mM; with MOPS	-0.2	+0.2	+0.6	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.4	-0.4	N.D.	-0.3
pH	pH 7	-0.7	+0.8	+0.1	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.0	-0.4	N.D.	+0.2
nitrogen source	Ammonium chloride (N); with MOPS	-0.6	+0.2	+0.4	N.D.	+0.7
pH	pH 6	-0.4	+0.3	+0.2	N.D.	+0.7
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.2	+0.4	+0.1	N.D.	+0.9