Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3206 and PP_3207 overlap by 4 nucleotidesPP_3207 and PP_3208 are separated by 79 nucleotidesPP_3208 and PP_3209 overlap by 4 nucleotidesPP_3209 and PP_3210 are separated by 38 nucleotides PP_3206: PP_3206 - conserved protein of unknown function, at 3,638,988 to 3,639,974 _3206 PP_3207: PP_3207 - putative Cyclase, at 3,639,971 to 3,640,753 _3207 PP_3208: PP_3208 - Oxidoreductase, Pdr/VanB family, at 3,640,833 to 3,641,777 _3208 PP_3209: PP_3209 - Isoxanthopterin deaminase, at 3,641,774 to 3,643,204 _3209 PP_3210: PP_3210 - ABC transporter, permease protein, at 3,643,243 to 3,644,046 _3210
Group Condition PP_3206 PP_3207 PP_3208 PP_3209 PP_3210
phage P. putida Sci Big MOI 0.1 -0.3 -0.7 -0.2 -0.6 N.D.
phage P. putida Sci small MOI 0.1 -1.4 +0.1 -0.4 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -0.4 -0.3 -0.1 N.D.
stress Growth with Chloride 500 mM -0.7 -0.2 -0.5 -0.2 N.D.
pH Growth at pH6 and (C) D-Glucose -1.4 -0.1 -0.4 +0.3 N.D.
temperature Growth at 30C; with MOPS -1.1 -0.2 -0.1 -0.1 N.D.
pH Growth at pH7 and (C) D-Glucose -0.8 -0.4 +0.2 -0.4 N.D.
pH Growth at pH7 and (C) Trisodium citrate -0.5 -0.7 -0.3 +0.1 N.D.
pH Growth at pH8 and (C) D-Glucose -0.8 -0.5 -0.1 +0.1 N.D.
temperature shift Temperature shift 30_to_21; with MOPS -0.8 +0.2 -0.3 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.8 -0.4 +0.1 -0.1 N.D.
temperature Growth at 25C; with MOPS -0.8 -0.1 -0.5 +0.2 N.D.
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.7 -0.6 +0.4 +0.1 N.D.
stress Growth with Chloride 500 mM; with MOPS -0.3 -0.4 -0.4 +0.3 N.D.
carbon source D-Glucose (C); with MOPS -0.8 +0.3 -0.5 +0.2 N.D.
pH pH 9 -0.8 -0.4 +0.3 +0.3 N.D.
phage P. putida PUT 7 MOI 1 +0.5 +0.2 -0.7 -0.5 N.D.
temperature shift Temperature shift 10_to_30; with MOPS -0.7 +0.4 +0.1 -0.3 N.D.
carbon source carbon source Glycerol 108.6 mM -0.8 -0.3 +0.4 +0.2 N.D.
nitrogen source nitrate (N) -0.7 +0.1 -0.3 +0.4 N.D.
pH pH 7 -0.7 -0.7 +0.8 +0.1 N.D.
carbon source carbon source 2-Deoxy-D-glucose 50 mM -1.0 +0.3 +0.4 -0.1 N.D.
stress Growth with Chloride 200 mM; with MOPS -0.8 -0.2 +0.2 +0.6 N.D.
carbon source carbon source D-Glucose 55.5 mM -0.6 -0.3 +0.3 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 +0.2 +0.5 -0.4 N.D.
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.4 -0.2 -0.3 +0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.1 +1.0 -0.4 N.D.
carbon source carbon source 4-vinylphenol 0.01 mM -0.6 +0.0 +0.7 +0.1 N.D.
pH pH 4 -0.6 +0.2 +0.4 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 +0.7 +0.4 -0.4 N.D.
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