Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3204	PP_3205	PP_3206	PP_3207	PP_3208
pH	Growth at pH6 and (C) D-Glucose	-0.7	-0.5	-1.4	-0.1	-0.4
pH	Growth at pH9 and (C) D-Glucose	-1.4	-0.1	-0.8	+0.2	-0.3
carbon source	Trisodium citrate (C)	-1.2	-0.9	+0.1	+0.0	-0.3
carbon source	D-Glucose (C)	-0.5	-1.1	-0.2	+0.0	-0.3
carbon source	ferulate (C); with MOPS	-1.5	-0.5	-0.2	+0.2	-0.4
pH	Growth at pH6 and (C) D-Glucose	-1.2	-0.4	-0.1	-0.3	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.3	-1.3	-0.4	+0.1	-0.1
nitrogen source	NAG (N); with MOPS	-1.4	+0.3	-0.7	+0.1	-0.1
pH	Growth at pH7 and (C) Trisodium citrate	-1.1	-0.7	-0.2	+0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-1.0	+0.2	+0.3	-0.4
carbon source	D-Glucose (C); with MOPS	+0.2	-0.8	-0.8	+0.3	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-1.4	+0.5	-0.4	+0.3	-0.3
phage	P. putida Sci Big MOI 0.1	-0.7	+0.7	-0.3	-0.7	-0.2
phage	P. putida Sci small MOI 0.1	+0.6	-0.2	-1.4	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.9	-0.0	+0.6	+0.1	+0.1
carbon source	Myristic (C)	-1.3	+0.4	-0.1	+0.2	-0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	-1.2	+0.6	+0.2	-0.2	-0.1
pH	pH 7	+0.5	-0.2	-0.7	-0.7	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.8	-0.5	-0.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+1.1	-0.9	-0.4	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-0.8	-0.1	-0.0	-0.1
pH	pH 8	+0.6	-0.6	-0.4	+0.2	+0.5
pH	pH 9	+1.2	+0.1	-0.8	-0.4	+0.3
carbon source	carbon source Glycerol 108.6 mM	+0.9	+0.3	-0.8	-0.3	+0.4
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.8	+0.2	-1.0	+0.3	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.8	+0.6	-0.3	-0.4	+0.2
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	+1.0	+0.2	-0.3	-0.3	+0.5
phage	P. putida PUT 7 MOI 1	+1.5	-0.1	+0.5	+0.2	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.0	+1.1	-0.1	+0.2	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	+1.5	-0.1	+0.1	+0.2