Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3203	PP_3204	PP_3205	PP_3206	PP_3207
pH	Growth at pH7 and (C) Trisodium citrate	-0.8	-0.4	-0.1	-0.5	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.5	-0.3	-1.3	-0.4	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.3	-0.7	-0.5	-1.4	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.3	-1.2	-0.4	-0.1	-0.3
carbon source	ferulate (C); with MOPS	-0.3	-1.5	-0.5	-0.2	+0.2
pH	Growth at pH9 and (C) D-Glucose	+0.1	-1.4	-0.1	-0.8	+0.2
nitrogen source	NAG (N); with MOPS	-0.2	-1.4	+0.3	-0.7	+0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.5	-0.8	-0.4	-0.5	+0.2
carbon source	Trisodium citrate (C)	+0.2	-1.2	-0.9	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-1.9	-0.0	+0.6	+0.1
pH	Growth at pH7 and (C) D-Glucose	+0.5	-0.6	-0.2	-0.8	-0.4
carbon source	D-Glucose (C)	+0.4	-0.7	-0.9	-0.3	+0.0
pH	pH 7	-0.2	+0.5	-0.2	-0.7	-0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.1	-1.4	+0.5	-0.4	+0.3
carbon source	Myristic (C)	-0.3	-1.3	+0.4	-0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.8	-1.0	+0.2	+0.3
phage	P. putida Sci small MOI 0.1	-0.2	+0.6	-0.2	-1.4	+0.1
phage	P. putida Sci Big MOI 0.1	+0.1	-0.7	+0.7	-0.3	-0.7
carbon source	D-Glucose (C); with MOPS	+0.2	+0.2	-0.8	-0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	-0.3	-0.8	-0.5	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.5	+1.1	-0.9	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	-0.4	+0.8	+0.2	-1.0	+0.3
pH	pH 8	+0.5	+0.6	-0.6	-0.4	+0.2
carbon source	carbon source Glycerol 108.6 mM	+0.4	+0.9	+0.3	-0.8	-0.3
pH	pH 9	+0.6	+1.2	+0.1	-0.8	-0.4
carbon source	Delta-Undecalactone (C)	+1.7	-0.6	-0.2	-0.1	+0.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.7	+0.7	+0.7	+0.2	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.1	+1.0	+1.1	-0.1	+0.2
phage	P. putida PUT 7 MOI 1	+0.4	+1.5	-0.1	+0.5	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.6	+1.5	-0.1	+0.1