Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3201	PP_3202	PP_3203	PP_3204	PP_3205
carbon source	ferulate (C); with MOPS	-0.2	-0.3	-0.3	-1.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.1	-0.4	-1.9	-0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.9	-0.1	-0.0	-1.0	-0.3
carbon source	Trisodium citrate (C)	+0.4	-0.3	+0.2	-1.2	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	+0.6	-0.4	-0.5	-0.8	-0.4
temperature	Growth at 30C; with MOPS	+0.6	-0.0	-0.9	-0.7	-0.4
pH	Growth at pH7 and (C) D-Glucose	-1.0	+0.2	+0.5	-0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	+0.3	+0.3	-0.8	-1.0
pH	Growth at pH6 and (C) D-Glucose	+0.9	-0.1	-0.3	-1.2	-0.4
pH	Growth at pH7 and (C) Trisodium citrate	+0.8	-0.1	+0.1	-1.1	-0.7
nitrogen source	NAG (N); with MOPS	+0.8	-0.2	-0.2	-1.4	+0.3
carbon source	Tween 20 (C)	+0.8	-0.4	+0.0	-0.9	-0.3
phage	P. putida Sci small MOI 0.1	-1.9	+0.3	-0.2	+0.7	+0.4
nitrogen source	nitrogen source nitrite 0.5mM	-0.2	-0.6	+0.1	+0.8	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.6	-0.1	-0.0	-1.2	+0.6
pH	Growth at pH7 and (C) D-Glucose	+0.9	-0.6	-0.1	-0.5	+0.2
pH	Growth at pH6 and (C) D-Glucose	+1.1	-0.3	+0.3	-0.7	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	-0.1	-0.8	+0.5	+1.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-0.3	+0.3	-0.4	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.2	+0.5	+0.1	-0.8
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.0	-0.2	-0.7	+0.7	+0.7
nitrogen source	Urea (N)	+0.6	-0.2	-0.3	+0.6	+0.6
carbon source	carbon source Glycerol 108.6 mM	-0.7	+0.4	+0.4	+0.9	+0.3
reactor	72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay	+0.7	-0.0	+0.2	-0.3	+1.0
pH	pH 9	-0.4	+0.2	+0.6	+1.2	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.0	+0.3	+0.6	+1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-0.1	+0.1	+1.0	+1.1
phage	P. putida PUT 7 MOI 1	+0.6	+0.3	+0.4	+1.5	-0.1
carbon source	Delta-Undecalactone (C)	+1.3	+1.7	+1.3	+0.0	-0.5
carbon source	Delta-Undecalactone (C)	+1.6	+1.7	+1.7	-0.6	-0.2