Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5590	PP_3201	PP_3202	PP_3203	PP_3204
carbon source	ferulate (C); with MOPS	-0.4	-0.2	-0.3	-0.3	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.2	+0.1	-0.1	-0.4	-1.9
carbon source	Delta-Nonalactone (C)	-0.5	-0.1	-0.2	-0.5	-0.9
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and L-tyrosine 5 mM	-0.0	-0.9	-0.1	-0.0	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.9	-0.4	-0.5	-0.2
carbon source	D-Glucose (C); with MOPS	-0.2	-1.5	+0.3	-0.3	+0.0
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.2	-1.3	+0.0	+0.2	-0.4
temperature	Growth at 30C; with MOPS	-0.4	+0.6	-0.0	-0.9	-0.7
pH	Growth at pH7 and (C) D-Glucose	-0.2	-1.0	+0.2	+0.5	-0.6
pH	Growth at pH6 and (C) Trisodium citrate	-0.0	+0.6	-0.4	-0.5	-0.8
carbon source	ferulate (C); with MOPS	-0.5	+0.6	-0.0	-0.1	-1.0
nitrogen source	NAG (N); with MOPS	+0.0	+0.8	-0.2	-0.2	-1.4
carbon source	Trisodium citrate (C)	+0.0	+0.4	-0.3	+0.2	-1.2
pH	Growth at pH6 and (C) D-Glucose	-0.1	+0.9	-0.1	-0.3	-1.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v dodecane overlay	+0.3	+0.6	-0.1	-0.0	-1.2
phage	P. putida Sci small MOI 0.1	+0.6	-1.9	+0.3	-0.2	+0.7
pH	Growth at pH7 and (C) Trisodium citrate	-0.1	+0.9	+0.0	-0.8	-0.4
pH	Growth at pH7 and (C) D-Glucose	-0.0	+0.9	-0.6	-0.1	-0.5
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.1	-1.1	-0.0	+0.1	+0.8
carbon source	Tween 20 (C)	+0.1	+0.8	-0.4	+0.0	-0.9
no stress control	Growth with no stress	-0.3	+0.7	-0.1	+0.2	-0.8
pH	Growth at pH6 and (C) Trisodium citrate	-0.4	+0.7	+0.2	+0.0	-0.8
pH	Growth at pH7 and (C) Trisodium citrate	+0.1	+0.8	-0.1	+0.1	-1.1
pH	Growth at pH6 and (C) D-Glucose	+0.1	+1.1	-0.3	+0.3	-0.7
carbon source	carbon source Glycerol 108.6 mM	+0.1	-0.7	+0.4	+0.4	+0.9
nitrogen source	Urea (N); with MOPS	+0.2	+0.7	+0.2	-0.4	+0.6
pH	pH 9	+0.2	-0.4	+0.2	+0.6	+1.2
phage	P. putida PUT 7 MOI 1	-0.2	+0.6	+0.3	+0.4	+1.5
carbon source	Delta-Undecalactone (C)	+1.6	+1.3	+1.7	+1.3	+0.0
carbon source	Delta-Undecalactone (C)	+1.8	+1.6	+1.7	+1.7	-0.6