Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3195	PP_3196	PP_3197	PP_3198	PP_3199
nitrogen source	NAG (N); with MOPS	-0.2	+0.1	-0.8	-2.3	-0.6
carbon source	1,3-Butandiol (C)	+0.2	+0.2	+0.2	-4.5	+0.2
carbon source	ferulate (C); with MOPS	-0.2	-0.2	-0.1	-2.7	+0.1
carbon source	ferulate (C); with MOPS	+0.1	+0.2	-0.2	-3.3	+0.2
pH	pH 7	-0.1	-0.5	-0.2	-1.8	-0.2
carbon source	carbon source D-Glucose 55.5 mM	-0.5	-0.5	-1.4	-0.4	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	-0.2	+0.4	-2.7	-0.0
phage	P. putida Missley MOI 0.1	-0.1	-0.0	-1.9	-0.5	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	-0.2	-1.7	-1.7	+0.6
temperature	Growth at 30C; with MOPS	-0.4	-0.0	-1.0	-0.9	-0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4	+0.0	-0.1	-2.3	-0.4
temperature	Growth at 25C	-0.7	-0.3	-0.1	-1.3	+0.4
carbon source	D-Glucose (C)	-0.1	-0.1	-1.5	-0.6	+0.4
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.3	-2.1	+0.1	+0.2
carbon source	D-Glucose (C)	-0.0	-0.2	+0.5	-2.4	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	+0.0	-0.1	+0.2	-2.1	+0.4
carbon source	L-Lysine (C)	+0.0	+0.1	-0.2	-1.5	+0.5
carbon source	ferulate (C); with MOPS	-0.2	+0.4	-0.1	-1.4	+0.3
phage	P. put South MOI 0.1	-0.2	+0.3	-0.5	+0.5	-0.9
carbon source	L-Phenylalanine 5 mM (C)	+0.2	+0.2	-0.4	-1.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.3	+0.5	-1.4	+0.4
carbon source	L-Leucine (C)	-0.0	+0.4	-0.1	-1.5	+1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.8	-0.1	-0.2	-1.0	+0.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.1	+0.5	+0.3	-1.5	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.4	-0.5	+1.2	-0.5
pH	Growth at pH6 and (C) D-Glucose	+0.1	+0.1	-0.6	+1.6	+0.1
carbon source	Tween 20 (C)	-0.1	+0.2	-0.5	+1.9	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.1	-0.0	+2.0	+1.1
carbon source	Delta-Undecalactone (C)	+0.1	+0.3	+1.6	+1.9	+1.7
carbon source	Delta-Undecalactone (C)	-0.0	+0.3	+2.2	+2.7	+1.8