Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3192	PP_3193	PP_3194	PP_3195	PP_3196
phage	P. putida Missley MOI 0.1	-2.0	N.D.	-0.1	-0.1	-0.0
temperature	Growth at 25C	-0.3	N.D.	-0.4	-0.7	-0.3
stress	R2A with Fusaric 120 ug/mL	-0.8	N.D.	-0.4	+0.1	-0.4
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.6	N.D.	-0.6	-0.5	+0.1
carbon source	Valerolactone (C)	-1.7	N.D.	-0.1	+0.1	+0.1
nitrogen source	Urea (N)	-0.7	N.D.	-0.6	-0.4	+0.3
stress	R2A with Fusaric 480 ug/mL	-1.1	N.D.	+0.1	-0.4	+0.0
carbon source	D-Glucaric (C)	-1.0	N.D.	-0.3	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.4	N.D.	+0.0	-0.2	+0.4
nitrogen source	2,6-diaminopimelic (N)	-1.7	N.D.	-0.1	+0.2	+0.5
pH	Growth at pH7 and (C) D-Glucose	-1.0	N.D.	+0.3	-0.6	+0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	-0.7	N.D.	+0.3	-0.0	-0.5
nitrogen source	nitrite (N)	-0.7	N.D.	+0.3	-0.3	-0.3
carbon source	D-Glucuronic gamma lactone (C)	-0.5	N.D.	-0.7	+0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.1	N.D.	+0.0	+0.2	+0.3
temperature	Growth at 25C; with MOPS	-0.7	N.D.	+0.5	-0.2	-0.2
nitrogen source	2,6-diaminopimelic (N)	-1.1	N.D.	+0.4	+0.3	-0.2
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.6	N.D.	-0.8	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-1.0	N.D.	+0.5	+0.1	+0.0
carbon source	Myristic (C)	-0.0	N.D.	-1.2	+0.5	+0.4
temperature shift	Temperature shift 30_to_34; with MOPS	-0.4	N.D.	+0.4	-0.6	+0.3
phage	P. put South MOI 10	+0.1	N.D.	-0.8	-0.2	+0.5
temperature	Growth at 25C	-1.0	N.D.	+0.5	+0.0	+0.4
pH	pH 7	+1.1	N.D.	-0.3	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	N.D.	-0.7	-0.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	N.D.	+0.4	+0.6	-0.2
nitrogen source	D-2-Aminobutyric (N)	+1.2	N.D.	-0.8	-0.0	+0.0
phage	P. putida Sci Big MOI 0.1	+1.5	N.D.	-0.4	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	N.D.	-0.3	+0.8	-0.1
pH	pH 8	+1.3	N.D.	+0.7	-0.1	+0.2