Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3177 and PP_3178 are separated by 141 nucleotidesPP_3178 and PP_3179 are separated by 19 nucleotidesPP_3179 and PP_3180 are separated by 127 nucleotidesPP_3180 and PP_3181 overlap by 11 nucleotides PP_3177: PP_3177 - conserved protein of unknown function, at 3,601,284 to 3,602,453 _3177 PP_3178: PP_3178 - glycerate kinase, at 3,602,595 to 3,603,734 _3178 PP_3179: PP_3179 - Transcriptional regulator, LysR family, at 3,603,754 to 3,604,653 _3179 PP_3180: PP_3180 - Smp-30/Cgr1 family protein, at 3,604,781 to 3,605,821 _3180 PP_3181: PP_3181 - Site-specific recombinase, phage integrase family, at 3,605,811 to 3,606,761 _3181
Group Condition PP_3177 PP_3178 PP_3179 PP_3180 PP_3181
phage P. put South MOI 1 +0.1 -0.3 -1.1 -0.7 -0.4
phage P. putida South MOI 0.1 -0.0 -0.4 -0.7 -0.7 -0.4
phage P. putida PUT10 MOI 1 -0.2 -0.3 -0.7 -0.6 -0.5
nitrogen source D-2-Aminobutyric (N) -0.8 -0.4 -0.6 -0.6 +0.2
phage P. putida PUT10 MOI 1 -0.0 -0.3 -1.1 -0.3 -0.2
nitrogen source Propiolactam (N) -0.1 -0.1 -1.1 -0.1 -0.6
nitrogen source D-2-Aminobutyric (N) -0.4 -0.0 -0.4 -0.8 -0.3
phage P. putida PUT10 MOI 10 +0.3 -0.3 -0.5 -1.3 -0.0
phage P. put PUT 10 MOI 10 +0.1 -0.2 -0.9 -0.7 -0.1
nitrogen source nitrogen source nitrite 1mM +0.4 -0.2 -1.3 -0.2 -0.3
phage P. put South MOI 0.1 +0.1 -0.3 -0.6 -0.7 -0.1
pH Growth at pH8 and (C) D-Glucose -0.2 -0.3 -1.1 -0.1 +0.2
phage P. putida South MOI 0.1 +0.2 -0.3 -0.4 -0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 +0.1 -0.3 +0.1 -0.7
carbon source carbon source Bisabolol 45 mM -0.2 +0.4 -0.6 -0.4 -0.5
phage P. putida PUT10 MOI 10 +0.2 -0.5 -0.6 -0.5 -0.0
phage P. putida Sci small MOI 0.1 -1.6 +0.4 +0.1 -0.6 +0.3
phage P. putida PUT 7 MOI 1 -1.7 -0.1 +0.7 -0.2 -0.0
pH Growth at pH6 and (C) D-Glucose +0.4 -0.3 -0.3 -0.4 -0.6
carbon source carbon source 2-Deoxy-D-glucose 50 mM -0.1 +0.3 -0.7 -0.4 -0.2
temperature shift Temperature shift 30_to_21; with MOPS +0.1 -0.6 +0.3 -0.6 -0.4
carbon source carbon source 4-vinylphenol 0.01 mM -0.3 +0.6 -0.2 -0.6 -0.5
nitrogen source 2,6-diaminopimelic (N) +0.4 -0.2 -1.4 +0.1 +0.1
carbon source carbon source 3-O-methyl-glucose 50 mM -0.1 +0.7 -0.4 -0.7 -0.0
nitrogen source 2,6-diaminopimelic (N) +0.5 -0.3 -0.6 -0.2 +0.3
phage P. putida Sci Big MOI 0.1 -0.0 -0.5 -0.7 +0.4 +0.4
carbon source carbon source 3-O-methyl-glucose 10 mM -0.2 +0.8 -0.6 -0.1 +0.3
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +0.1 +0.1 -0.8 +0.4
stress Formaldehyde 0.03125 vol% +0.3 -0.0 +0.6 -0.6 +0.4
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 -0.1 -0.6 +0.6 +0.4
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