Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3175	PP_3176	PP_3177	PP_3178	PP_3179
nitrogen source	2,6-diaminopimelic (N)	-0.5	-0.4	+0.4	-0.2	-1.4
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.0	-0.8	-0.4	-0.6
pH	Growth at pH8 and (C) D-Glucose	-0.2	-0.2	-0.2	-0.3	-1.1
phage	P. putida Sci Big MOI 0.1	-0.4	-0.5	-0.0	-0.5	-0.7
phage	P. put PUT 10 MOI 10	-0.5	-0.4	+0.1	-0.2	-0.9
phage	P. putida PUT 7 MOI 1	-0.7	+0.0	-1.7	-0.1	+0.7
pH	pH 5	-0.7	-0.3	-0.4	+0.2	-0.6
pH	Growth at pH8 and (C) Trisodium citrate	-0.3	-0.3	-0.2	-0.1	-0.9
carbon source	Myristic (C)	-0.4	-0.8	-0.3	+0.1	-0.4
nitrogen source	Ammonium chloride (N); with MOPS	-0.1	-0.3	-0.1	-0.4	-0.8
nitrogen source	nitrogen source nitrite 1mM	-0.2	-0.1	+0.4	-0.2	-1.3
phage	P. putida PUT10 MOI 1	+0.1	-0.1	-0.0	-0.3	-1.1
phage	P. put South MOI 1	-0.2	+0.1	+0.1	-0.3	-1.1
phage	P. putida Sci small MOI 0.1	-0.3	+0.1	-1.6	+0.4	+0.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.8	-0.3	+0.1	+0.2	-0.5
carbon source	carbon source D-Glucose 55.5 mM	-1.1	-0.3	+0.0	+0.3	+0.1
nitrogen source	2,6-diaminopimelic (N)	-0.3	-0.2	+0.5	-0.3	-0.6
nitrogen source	Propiolactam (N)	+0.2	+0.2	-0.1	-0.1	-1.1
pH	D-Glucose (C) pH 6	-0.3	+0.1	+0.3	-0.1	-1.0
nitrogen source	NAG (N); with MOPS	-0.4	-0.4	-0.5	+0.4	+0.2
pH	pH 6	-0.2	-0.4	-0.4	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	+0.1	-0.6	+0.1	-0.3
nitrogen source	Urea (N)	-0.5	+0.1	+0.1	-0.3	+0.6
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.0	+0.2	-0.2	+0.8	-0.6
no stress control	Growth with no stress	+0.5	-0.4	+0.5	-0.1	-0.3
carbon source	ferulate (C); with MOPS	+0.2	+0.7	-0.4	-0.4	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4	+0.5	+0.2	-0.1	-0.6
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	+0.7	-0.2	+0.3	+0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.8	+0.1	-0.4	-0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.6	+0.5	+0.0	-0.3