Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3164	PP_3165	PP_3166	PP_3167	PP_3168
carbon source	benzoic (C)	-7.9	-0.1	-0.5	+0.0	+0.1
carbon source	benzoic (C)	-7.8	-0.0	-0.4	+0.1	-0.2
carbon source	benzoic (C)	-3.8	-0.9	-1.0	+0.2	+0.2
phage	P. putida Missley MOI 0.1	-5.8	+0.7	+0.2	+0.6	-0.6
pH	Growth at pH6 and (C) D-Glucose	-2.2	-0.1	+0.0	-0.3	-0.3
temperature	Growth at 30C; with MOPS	-1.9	-0.2	-0.0	-0.4	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.9	-0.1	-0.1	-0.2	-0.0
reactor	24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO.	-1.8	-0.2	-0.3	+0.0	+0.0
nitrogen source	Urea (N); with MOPS	-1.8	+0.2	-0.1	-0.5	-0.1
nitrogen source	NAG (N); with MOPS	-1.6	+0.1	+0.0	-1.0	+0.3
carbon source	D-Lysine 10 mM (C)	-1.2	-0.4	-0.2	-0.2	-0.1
carbon source	D-Glucose (C); with MOPS	-0.9	-1.0	-0.1	+0.0	-0.1
carbon source	D-Glucose (C)	-1.9	-0.1	-0.2	+0.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.2	-0.6	-0.2	+0.1	-0.1
carbon source	1,3-Butandiol (C)	-1.6	-0.5	-0.2	+0.2	+0.0
pH	Growth at pH6 and (C) Trisodium citrate	-1.8	-0.0	+0.1	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.5	-0.8	-0.5	-0.3	+0.3
temperature shift	Temperature shift 10_to_34; with MOPS	-1.6	-0.1	+0.1	-0.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.0	-0.1	-0.5	-0.2	+0.2
temperature shift	Temperature shift 30_to_21; with MOPS	-1.6	-0.0	-0.2	+0.3	-0.1
pH	Growth at pH7 and (C) D-Glucose	-1.0	-0.7	+0.2	-0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	+0.6	-0.2	-0.2	-0.4
temperature shift	Temperature shift 30_to_34; with MOPS	-1.5	-0.1	+0.3	+0.3	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.9	-0.5	-0.4	+0.1	-0.6
nitrogen source	D-2-Aminobutyric (N)	+0.9	-0.4	-0.3	+0.2	-0.4
phage	P. putida Sci small MOI 0.1	+0.7	+0.3	+0.6	-0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.3	-0.1	-0.5	-0.2	-0.0
nitrogen source	D-2-Aminobutyric (N)	+0.8	+0.3	+0.2	-0.7	-0.1
nitrogen source	2,6-diaminopimelic (N)	+0.7	+0.1	+0.5	-0.6	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+1.1	+0.3	-0.4	+0.4	-0.0