Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3158	PP_5589	PP_3159	PP_3160	PP_3161
carbon source	benzoic (C)	+0.0	-0.4	-3.2	-0.2	-2.9
carbon source	benzoic (C)	+0.1	-0.1	-3.0	-0.2	-2.8
nitrogen source	nitrate (N)	-0.6	-2.9	+0.1	+0.0	-0.1
nitrogen source	NAG (N); with MOPS	-0.9	-2.2	+0.0	+0.1	-0.3
carbon source	Crotonic (C)	-0.0	-2.8	+0.1	-0.0	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-1.2	-0.4	-0.2	-0.3
nitrogen source	Hippuric (N)	-0.5	+0.0	-0.8	-0.4	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-1.6	-0.0	-0.2	-0.1
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.6	-0.5	-0.4	-0.1	-0.3
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.5	-0.7	-0.2	-0.5
phage	P. putida Sci Big MOI 0.1	-0.7	-1.0	-0.2	-0.1	+0.4
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.1	+0.2	-0.0	-0.2
nitrogen source	nitrogen source Ammonium chloride 20mM	-0.6	-0.9	-0.2	+0.2	+0.0
nitrogen source	NAG (N); with MOPS	-0.6	-1.2	+0.2	+0.2	+0.0
pH	Growth at pH6 and (C) Trisodium citrate	-1.1	+0.1	-0.7	+0.3	+0.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.8	+0.3	-0.4	+0.2	-0.2
carbon source	1,3-Butandiol (C)	+0.4	-1.3	-0.3	+0.1	+0.1
carbon source	benzoic (C)	+0.4	+0.2	-0.7	-0.1	-0.7
carbon source	Trisodium citrate (C)	+0.1	-1.3	+0.1	+0.5	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	+0.2	-0.5	+0.5	-0.1
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.2	-1.0	+0.1	+0.4	-0.2
nitrogen source	Ammonium chloride (N)	-1.1	+0.7	+0.0	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	+1.0	-0.5	-0.4	-0.1
phage	P. putida Missley MOI 0.1	+0.3	+0.5	+0.4	-0.4	-0.3
carbon source	ferulate (C); with MOPS	+0.2	+0.8	-0.6	-0.1	+0.2
nitrogen source	D-2-Aminobutyric (N)	-0.4	+1.3	-0.3	+0.1	-0.2
phage	P. putida Sci small MOI 0.1	+1.0	-0.8	+0.5	+0.2	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+1.3	-0.1	-0.0	-0.2
nitrogen source	2,6-diaminopimelic (N)	+0.6	+0.6	+0.4	+0.6	-0.0
phage	P. putida Sci small MOI 0.1	+0.6	+0.1	+0.8	+0.8	+0.2