Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3155	PP_3156	PP_3157	PP_3158	PP_5589
nitrogen source	nitrate (N)	-0.2	-0.0	+0.2	-0.6	-2.9
nitrogen source	NAG (N); with MOPS	+0.0	-0.2	+0.2	-0.9	-2.2
carbon source	Crotonic (C)	+0.1	+0.1	-0.0	-0.0	-2.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.3	+0.1	-0.4	-1.6
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.0	+0.0	-1.9	-0.0	-0.2
phage	P. putida Sci Big MOI 0.1	+0.1	-0.5	+0.0	-0.7	-1.0
nitrogen source	nitrogen source Ammonium chloride 20mM	+0.0	-0.5	+0.2	-0.6	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-0.1	-0.1	-0.4	-1.2
nitrogen source	NAG (N); with MOPS	-0.1	+0.1	-0.0	-0.6	-1.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	+0.2	-0.3	-0.4	-1.1
carbon source	4-Aminobutyric 10 mM (C)	-0.4	+0.2	+0.2	-0.4	-1.1
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	-0.1	+0.3	-0.4	-0.6	-0.5
pH	pH 6	+0.1	-0.4	+0.2	-0.1	-0.9
pH	Growth at pH6 and (C) Trisodium citrate	-0.0	+0.3	+0.2	-0.3	-1.2
carbon source	1,3-Butandiol (C)	-0.1	-0.3	+0.1	+0.4	-1.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-1.0	-0.1	+0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.7	-1.1	+0.0	+1.0
phage	P. putida Sci small MOI 0.1	+0.0	-1.5	+0.2	+1.0	-0.8
temperature	Growth at 25C; with MOPS	-0.2	+0.3	-0.4	-0.9	+0.3
pH	pH 4	+0.1	-0.6	+0.5	-0.3	-0.4
nitrogen source	Propandiamine (N)	-0.0	-1.6	+0.4	+0.6	+0.0
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.2	-0.2	+0.4	+0.0	-1.1
temperature shift	Temperature shift 30_to_34; with MOPS	+0.0	-0.7	+0.1	-0.3	+0.9
pH	Growth at pH6 and (C) D-Glucose	-0.3	+0.1	-0.6	+0.0	+0.8
nitrogen source	Ammonium chloride (N)	-0.0	+0.1	+0.4	-1.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.4	-0.2	-0.2	+0.7
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.1	-0.2	-0.4	+1.3
temperature shift	Temperature shift 10_to_30; with MOPS	-0.0	+0.5	+0.2	-0.2	+1.0
carbon source	ferulate (C); with MOPS	-0.2	+0.4	+0.3	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.2	+0.0	+0.4	+1.3