Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3149	PP_3150	PP_3151	PP_3152	PP_3153
carbon source	Valerolactam 10 mM (C)	-0.3	-0.1	-1.2	-1.1	-0.0
phage	P. putida Sci small MOI 0.1	-0.2	-0.5	-1.0	-0.2	-0.5
carbon source	5-Aminovaleric 10 mM (C)	-0.3	-0.2	-0.8	-1.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.8	-0.5	-0.9	-0.5
nitrogen source	spermidine (N)	-1.5	-0.0	-0.2	-0.1	-0.0
carbon source	5-Aminovaleric 10 mM (C)	-0.2	-0.2	-0.5	-0.4	-0.2
carbon source	L-Leucine (C)	-0.6	-1.0	+0.1	-0.2	+0.0
pH	Growth at pH7 and (C) Trisodium citrate	-0.4	-0.9	+0.1	+0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.4	-0.2	+0.2	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.1	-0.6	-0.1	+0.2	+0.4
phage	P. putida PUT 7 MOI 1	+0.2	-0.5	-0.4	-0.2	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	+0.4	-0.2	-0.6	-0.3
temperature shift	Temperature shift 30_to_4	-0.3	-1.1	-0.0	-0.0	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-0.2	-0.4	-0.3	+0.5
temperature	Growth at 30C; with MOPS	-0.1	-0.6	+0.2	+0.1	-0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.5	-0.5	-0.2	-0.0	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	+0.2	-0.4	-0.3	-0.3
phage	P. putida Missley MOI 0.1	-0.2	-0.2	+0.2	-0.2	-0.7
phage	P. putida Sci small MOI 0.1	-0.9	-0.3	-0.2	+0.5	+0.2
carbon source	Tween 20 (C)	+0.4	-0.7	-0.0	-0.4	+0.1
carbon source	ferulate (C); with MOPS	-0.2	+0.4	+0.2	-0.4	-0.5
temperature shift	Temperature shift 30_to_4	+0.2	-1.0	+0.1	+0.2	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-0.2	-0.7	+0.1	+0.2	+0.3
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.5	+0.2	+0.1	-0.2	+0.5
phage	PUT 8 MOI 1	+0.2	+0.4	+0.0	+0.3	-0.8
nitrogen source	nitrogen source nitrite 1mM	+0.4	-0.5	+0.3	+0.3	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	+0.3	+0.3	-0.2	+0.7
pH	Growth at pH9 and (C) Trisodium citrate	-0.3	+0.3	+0.3	+0.4	+0.2
pH	pH 6	+0.3	+0.3	+0.4	-0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	+0.1	+0.9	+0.7