Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3144	PP_3145	PP_3146	PP_3147	PP_3148
nitrogen source	spermidine (N)	+0.0	+0.0	-4.6	-2.6	-3.2
nitrogen source	spermidine (N)	+0.1	+0.1	-4.6	-2.6	-3.1
phage	P. putida Sci small MOI 0.1	-0.2	-2.2	+0.4	-0.5	-0.6
phage	P. putida Sci Big MOI 0.1	-1.3	-0.2	-0.1	-0.9	-0.3
nitrogen source	L-Serine (N)	-2.3	-0.0	-0.2	+0.0	-0.0
nitrogen source	L-Serine (N)	-2.3	-0.0	-0.0	-0.1	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4	-0.1	-0.3	-0.3	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	-0.3	-0.5	-0.3	+0.1
no stress control	Growth with no stress	-0.9	-0.5	+0.1	-0.2	+0.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.6	-0.4	+0.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-0.2	-0.1	+0.3	-0.5
temperature shift	Temperature shift 10_to_25; with MOPS	-0.7	-0.3	+0.1	-0.3	+0.4
carbon source	L-Phenylalanine 5 mM (C)	-0.3	-0.8	+0.2	-0.1	+0.3
carbon source	Valerolactone (C)	-0.3	-0.6	-0.6	+0.5	+0.3
temperature shift	Temperature shift 30_to_25	+0.5	-0.7	+0.2	+0.0	-0.2
carbon source	Valeric (C)	+0.3	+0.3	+0.1	-0.7	+0.2
phage	P. putida PUT10 MOI 0.1	+0.8	-0.5	+0.1	+0.3	-0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4	+0.4	-0.1	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.0	+0.2	+0.1	-0.3
phage	P. putida PUT10 MOI 10	+1.0	+0.3	-0.1	+0.1	-0.4
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.5	-0.1	+0.5	-0.2	+0.3
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.9	+0.2	+0.1	-0.3	+0.2
pH	pH 9	+0.5	+0.4	+0.7	-0.3	+0.2
pH	pH 7	+0.6	+0.5	-0.2	+0.2	+0.3
pH	Growth at pH6 and (C) D-Glucose	+0.1	+0.5	+0.4	+0.5	-0.1
nitrogen source	nitrate (N)	+0.5	+0.4	+0.5	-0.0	+0.2
pH	pH 6	+0.6	+0.4	+0.5	-0.1	+0.1
carbon source	carbon source 2-Deoxy-D-glucose 50 mM	+0.4	+0.7	+0.1	-0.0	+0.4
nitrogen source	Urea (N); with MOPS	+0.8	+0.3	+0.1	+0.2	+0.3
phage	PUT 8 MOI 1	+0.8	+0.4	+0.2	+0.2	+0.0