Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3138	PP_3139	PP_3140	PP_3141	PP_3142
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8	-1.1	-0.8	-0.7	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.1	+0.1	-2.3	+0.2	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.3	-0.5	-0.6	-0.4	-0.3
phage	P. putida Sci small MOI 0.1	-0.8	-0.1	-0.1	-0.9	-0.1
nitrogen source	D-2-Aminobutyric (N)	-0.5	-0.0	-0.8	-0.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	-0.1	-0.8	-0.1	-0.5
pH	Growth at pH9 and (C) Trisodium citrate	-0.9	+0.2	+0.4	-0.7	-0.3
pH	Growth at pH7 and (C) D-Glucose	-0.3	-0.3	+0.4	-0.7	-0.0
carbon source	ferulate (C); with MOPS	-0.8	+0.1	-0.2	+0.4	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.5	-0.4	+0.2	-0.4	+0.5
temperature	Growth at 25C; with MOPS	+0.1	+0.1	-0.5	+0.5	-0.7
carbon source	ferulate (C); with MOPS	+0.0	+0.6	-0.0	+0.1	-0.9
carbon source	4-Aminobutyric 10 mM (C)	-0.6	+0.3	+0.4	-0.0	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.1	-0.1	-0.5	+0.9	+0.4
carbon source	Delta-Undecalactone (C)	+0.1	+0.2	+0.2	+0.8	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.7	+0.2	+0.2	+0.2	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2	+0.3	+0.4	+0.4	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	+0.3	+0.0	+0.4	+0.6
carbon source	3-methyl-1-butanol (C)	+0.4	+0.3	+0.5	+0.4	+0.4
carbon source	Valeric (C)	+0.8	+0.4	+0.3	+0.3	+0.1
pH	Valerolactone (C) pH 6.5	+0.3	+0.2	+0.6	+0.5	+0.4
carbon source	Rhamnogalacturonan - from potato (C)	+0.5	+0.3	+0.5	+0.5	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5	+0.4	+0.5	+0.5	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.7	+0.5	+0.5	+0.2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5	+0.4	+0.5	+0.3	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.5	+0.3	+0.5	+0.6	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	+0.4	+0.6	+0.4	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.6	+0.4	+0.5	+0.7	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.6	+0.8	+0.7	+0.5	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.8	+0.8	+0.4	+0.9	+0.8