Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3132	PP_5588	PP_3133	PP_3134	PP_3135
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-3.3	+0.1	-0.4	-1.1	-0.8
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-1.7	-0.1	-0.1	-0.8	-1.3
carbon source	L-Lysine 10 mM (C)	-0.8	-0.6	-0.1	-0.7	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-1.0	-0.4	-0.2	-0.5	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0	+0.2	+0.1	-0.8	-0.3
pH	pH 6	-0.3	-0.8	-0.2	+0.3	-0.5
nitrogen source	NAG (N); with MOPS	-0.4	-0.4	+0.2	-0.5	-0.3
nitrogen source	NAG (N); with MOPS	-0.1	-1.5	+0.1	+0.1	-0.0
pH	Growth at pH9 and (C) Trisodium citrate	-0.7	-0.7	+0.1	+0.1	-0.2
no stress control	Growth with no stress	-0.3	+0.1	-0.3	+0.3	-0.8
nitrogen source	D-2-Aminobutyric (N)	-0.8	+0.1	+0.3	-0.0	-0.4
pH	pH 8	-0.3	-0.6	-0.2	+0.3	+0.4
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.4	-0.4	-0.2	+0.6	-0.1
phage	P. put South MOI 10	-0.8	+0.7	-0.1	-0.1	+0.3
carbon source	L-Leucine (C)	+0.4	+0.6	-0.3	+0.1	-0.5
phage	P. putida Sci Big MOI 0.1	+0.0	-0.5	+0.6	+0.5	+0.1
carbon source	Valeric (C)	+1.1	-0.2	+0.1	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+2.0	+0.1	-0.3	-0.5
carbon source	ferulate (C); with MOPS	-0.3	+1.2	+0.0	+0.3	+0.1
phage	P. putida Missley MOI 0.1	+0.1	+0.8	+0.1	+0.7	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	-0.4	+0.3	+0.5	+0.7
carbon source	4-Aminobutyric 10 mM (C)	+0.4	-0.2	+0.2	+0.4	+0.6
carbon source	D-Glucose (C) 1.25 mM	+1.2	-0.0	-0.0	+0.1	+0.3
carbon source	Rhamnogalacturonan - from potato (C)	+0.1	+0.4	+0.3	+0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.6	+0.3	+0.2	+0.4
phage	P. putida Sci small MOI 0.1	+0.0	+0.6	+0.6	+0.5	+0.3
carbon source	D-Glucose (C) 2.5 mM	+1.2	+0.3	+0.1	+0.2	+0.4
carbon source	pyruvate (C)	+1.3	+0.1	+0.1	+0.5	+0.3
carbon source	Delta-Decalactone (C)	+0.5	+0.4	+0.5	+0.3	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.5	+0.2	+0.4	+0.6	+0.7