Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_3123 and PP_3124 are separated by 154 nucleotidesPP_3124 and PP_3125 are separated by 76 nucleotidesPP_3125 and PP_5586 are separated by 250 nucleotidesPP_5586 and PP_3126 are separated by 264 nucleotides PP_3123: PP_3123 - acetoacetyl CoA-transferase (subunit B), at 3,534,057 to 3,534,713 _3123 PP_3124: PP_3124 - putative short chain fatty acid transporter, at 3,534,868 to 3,536,286 _3124 PP_3125: PP_3125 - putative transcriptional regulator (Cro/CI family), at 3,536,363 to 3,536,905 _3125 PP_5586: PP_5586 - exported protein of unknown function, at 3,537,156 to 3,537,332 _5586 PP_3126: PP_3126 - putative polysaccharide exported protein, at 3,537,597 to 3,538,154 _3126
Group Condition PP_3123 PP_3124 PP_3125 PP_5586 PP_3126
carbon source DL-3-Hydroxybutyric (C) -6.6 -0.5 N.D. -0.1 -0.3
carbon source DL-3-Hydroxybutyric (C) -6.6 -0.5 N.D. +0.1 -0.0
carbon source 1,3-Butandiol (C) -5.4 -0.1 N.D. -0.2 +0.0
carbon source rac-3-Hydroxypentanoic Acid (C) -4.9 -0.2 N.D. -0.0 +0.1
carbon source 3-methyl-1-butanol 0.1 vol% (C) -3.8 -0.4 N.D. -0.7 +0.3
carbon source 3-methyl-1-butanol (C) -4.7 -0.1 N.D. -0.1 +0.4
carbon source 3-hydroxypentanoate -3.7 -0.1 N.D. -0.4 -0.0
carbon source 1,3-Butandiol (C) -3.5 +0.0 N.D. -0.4 -0.2
carbon source L-Phenylalanine 5 mM (C) -4.1 +0.1 N.D. +0.2 -0.1
carbon source rac-3-Hydroxypentanoic Acid (C) -4.1 -0.2 N.D. +0.2 +0.2
carbon source L-Phenylalanine 5 mM (C) -3.6 -0.0 N.D. +0.2 -0.3
carbon source Levulinic Acid (C) -2.7 -0.1 N.D. -0.4 -0.3
carbon source 3-methyl-1-butanol (C) -3.8 -0.0 N.D. +0.0 +0.4
carbon source Levulinic Acid (C) -3.3 -0.1 N.D. -0.1 +0.0
carbon source 3-methyl-3-butenol (C) -2.9 +0.1 N.D. -0.2 +0.1
carbon source L-Phenylalanine 5 mM (C) -3.1 -0.0 N.D. +0.5 -0.2
carbon source 1,3-Butandiol (C) -2.6 -0.1 N.D. -0.0 +0.1
carbon source 3-methyl-3-butenol (C) -2.5 -0.1 N.D. -0.0 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.7 +0.2 N.D. -1.3 +0.2
carbon source Levulinic Acid (C) -2.7 -0.0 N.D. +0.2 +0.1
carbon source Levulinic Acid (C) -2.4 -0.1 N.D. +0.1 -0.0
carbon source 4-Methyl-2-oxopentanoic (C) -1.8 +0.1 N.D. -0.6 -0.1
carbon source 3-methyl-1-butanol 0.25 vol% (C) -2.2 +0.2 N.D. -0.3 -0.0
phage PUT 8 MOI 1 +0.1 -0.0 N.D. -2.2 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) -1.8 +0.1 N.D. -0.3 -0.2
carbon source 4-Methyl-2-oxopentanoic (C) -1.7 -0.2 N.D. -0.2 +0.0
carbon source 3-methyl-3-buten-1-ol 0.1 vol% (C) -2.1 +0.3 N.D. -0.1 +0.2
carbon source 4-Methyl-2-oxopentanoic (C) -2.0 -0.0 N.D. +0.4 +0.1
carbon source 3-methyl-3-buten-1-ol 0.25 vol% (C) -1.6 +0.2 N.D. -0.3 +0.2
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.4 -0.1 N.D. +0.7 +1.1
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