Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3081	PP_5560	PP_3082	PP_3083	PP_3084
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	N.D.	-0.4	-0.9	-0.1
phage	P. putida PUT 7 MOI 1	-1.6	N.D.	+0.3	-0.8	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.3	N.D.	-0.5	+0.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.4	N.D.	-0.2	+0.1	-0.0
temperature	Growth at 30C; with MOPS	-0.2	N.D.	-0.2	-1.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	N.D.	-0.7	-0.5	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.9	N.D.	-0.3	-0.2	-0.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	N.D.	-0.7	-0.0	+0.1
carbon source	4-Hydroxyvalerate (C) (40mM)	-0.6	N.D.	+0.1	-0.6	-0.0
pH	D-Glucose (C) pH 6.5	-0.8	N.D.	-0.4	+0.5	-0.1
nitrogen source	NAG (N); with MOPS	-1.2	N.D.	-0.1	+0.7	+0.0
phage	P. putida Sci small MOI 0.1	+0.2	N.D.	+0.5	-0.8	-0.3
pH	Growth at pH6 and (C) Trisodium citrate	-0.8	N.D.	-0.1	+0.4	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	N.D.	+0.6	-0.1	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	N.D.	+0.6	+0.3	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7	N.D.	+0.1	+0.5	-0.2
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	-0.9	N.D.	+0.3	+0.4	-0.1
nitrogen source	no extra (N); with MOPS	-0.8	N.D.	+0.2	+0.7	-0.1
nitrogen source	nitrate (N)	-0.8	N.D.	+0.4	+0.2	+0.3
carbon source	ferulate (C); with MOPS	-0.9	N.D.	-0.1	+0.8	+0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.6	N.D.	+0.1	+0.7	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	N.D.	+0.1	+0.8	-0.2
pH	Valerolactone (C) pH 6.5	-0.7	N.D.	+0.2	+0.6	+0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.8	N.D.	+0.3	-0.6	+0.0
pH	pH 9	+0.7	N.D.	-0.1	+0.3	-0.2
temperature shift	Temperature shift 30_to_25; with MOPS	+0.9	N.D.	-0.2	+0.5	-0.1
nitrogen source	NAG (N); with MOPS	+0.5	N.D.	-0.1	+0.6	+0.4
pH	Growth at pH7 and (C) D-Glucose	+0.2	N.D.	+0.2	+1.0	+0.1
phage	P. putida Sci small MOI 0.1	+1.0	N.D.	+0.3	+0.0	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.7	N.D.	+0.3	+0.4	+0.1