Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PP_3060	PP_3061	PP_3062	PP_3063	PP_3064
temperature	Growth at 30C; with MOPS	-0.1	+0.3	+0.2	-0.3	-5.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+0.2	-0.8	-0.2	-0.3	-3.9
phage	P. putida Missley MOI 0.1	-0.0	-0.9	-0.1	-0.9	-1.9
nitrogen source	nitrogen source nitrite 0.5mM	-0.7	+0.1	+0.5	-0.8	-2.1
pH	pH 6	-0.3	+0.1	-0.1	-0.6	-2.1
carbon source	3-methyl-1-butanol 0.25 vol% (C)	-0.7	+0.4	-0.1	-0.5	-2.0
phage	P. putida Sci Big MOI 0.1	-1.0	-0.7	+0.3	-0.9	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.2	-0.4	+0.0	-0.1	-2.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.1	-0.0	+0.1	-0.1	-2.6
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.4	-0.4	-0.0	-0.6	-1.3
nitrogen source	nitrogen source nitrate 5mM	-0.0	-0.1	+0.2	-0.1	-2.4
stress	MOPS minimal media_Glucose20mM with Fluoroacetate 80 mM	-0.1	-0.1	+0.2	-0.1	-2.4
carbon source	carbon source D-Glucose 55.5 mM	-1.3	+0.1	+0.0	-0.1	-1.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-1.3	-0.2	+0.2	-0.6
carbon source	4-Aminobutyric 10 mM (C)	+0.1	-0.7	+0.1	+0.0	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.0	-0.0	-0.5	-1.8
pH	D-Glucose (C) pH 7.5	-0.0	+0.2	+0.1	-0.0	-2.2
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.6	+0.3	-0.1	-0.9	-0.6
no stress control	Growth with no stress	+0.6	-0.1	+0.2	+0.0	-2.6
nitrogen source	nitrogen source nitrite 1mM	-0.2	-0.1	+0.4	-0.9	-0.9
nitrogen source	nitrogen source nitrite 0.5mM	-0.3	-0.1	+0.4	-0.2	-1.4
phage	PUT 8 MOI 1	-0.6	+0.5	-0.4	-0.1	-1.1
nitrogen source	2,6-diaminopimelic (N)	-0.4	-0.8	-0.0	-1.4	+1.1
carbon source	carbon source 3-O-methyl-glucose 10 mM	-0.1	+0.8	-0.3	-0.4	-1.2
carbon source	D-Glucose (C)	-0.2	+0.4	+0.3	-0.7	-1.0
pH	Growth at pH6 and (C) D-Glucose	+0.5	+0.4	+0.0	-0.3	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	+0.4	+0.2	+0.1	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	+0.8	-0.3	+0.3	-1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	-0.7	-0.8	+0.1	+0.4	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.7	-0.1	+0.1	+1.8