Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3043	PP_3044	PP_3045	PP_3046	PP_3047
phage	P. putida PUT 7 MOI 1	-4.4	+0.1	-0.6	N.D.	-0.3
nitrogen source	Propandiamine (N)	-3.0	-0.3	-0.4	N.D.	+0.1
phage	P. putida Sci small MOI 0.1	-1.1	-0.7	-0.4	N.D.	-0.5
phage	P. putida Missley MOI 0.1	-1.2	-0.1	+0.2	N.D.	-1.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.1	+0.4	-0.7	N.D.	+0.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-2.0	+0.3	-0.2	N.D.	-0.1
nitrogen source	Propiolactam (N)	-1.6	-0.1	+0.2	N.D.	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-1.9	+0.1	+0.3	N.D.	-0.1
nitrogen source	NAG (N); with MOPS	-2.3	+0.3	+0.2	N.D.	+0.1
stress	Growth with Chloride 500 mM	-1.4	-0.1	-0.2	N.D.	+0.2
phage	P. putida Sci Big MOI 0.1	+0.4	-1.0	-0.5	N.D.	-0.4
carbon source	D-Lysine 10 mM (C)	-1.8	+0.1	+0.1	N.D.	+0.1
phage	P. putida Sci small MOI 0.1	+0.4	-1.0	+0.3	N.D.	-1.1
carbon source	Acetate Carbon Source (20mM)	-1.2	+0.2	-0.2	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.4	-0.3	+0.0	N.D.	+0.4
reactor	48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.5	+0.1	-0.1	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-1.2	+0.2	+0.2	N.D.	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.6	+0.3	+0.3	N.D.	+0.3
nitrogen source	2,6-diaminopimelic (N)	+0.7	-0.7	-0.3	N.D.	-0.1
nitrogen source	D-2-Aminobutyric (N)	+1.4	+0.0	-0.7	N.D.	+0.0
carbon source	L-tyrosine 5 mM (C)	+1.5	-0.1	-0.3	N.D.	-0.1
pH	Growth at pH9 and (C) Trisodium citrate	+0.9	+0.4	+0.3	N.D.	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.6	+0.2	-0.6	N.D.	-0.1
carbon source	Delta-Nonalactone (C)	+1.6	-0.2	-0.0	N.D.	-0.0
pH	Growth at pH6 and (C) D-Glucose	+1.6	-0.0	-0.3	N.D.	+0.1
carbon source	Valerolactone (C)	+2.0	+0.1	-0.3	N.D.	-0.4
carbon source	D-Glucaric (C)	+1.5	-0.1	+0.2	N.D.	-0.0
carbon source	ferulate (C); with MOPS	+1.9	+0.2	-0.1	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.1	-0.2	+0.2	N.D.	+0.1
nitrogen source	nitrogen source nitrite 1mM	+1.6	+0.2	+0.3	N.D.	+0.3