Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3037	PP_3038	PP_3039	PP_3040	PP_3041
phage	P. putida Sci small MOI 0.1	-6.2	-0.2	-0.4	-1.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-2.6	-0.1	+0.2	-0.3	-1.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-2.4	-0.1	-0.3	-0.6	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-4.4	+0.1	+0.5	+0.0	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-3.1	-0.1	+0.0	-0.5	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-2.8	+0.3	+0.1	-0.7	-0.4
nitrogen source	nitrate (N)	-1.7	-0.0	-0.2	-1.0	-0.3
carbon source	Valeric (C)	-3.6	+0.0	+0.0	+0.1	+0.2
phage	P. putida PUT 7 MOI 1	-2.0	-0.6	-0.2	-0.4	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.4	-0.1	-0.2	-0.5	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-2.4	-0.3	+0.2	+0.1	+0.2
no stress control	Growth with no stress	-0.9	+0.1	+0.0	-1.2	+0.0
pH	pH 7	-0.9	-0.0	+0.2	-0.8	-0.3
carbon source	carbon source D-Glucose 55.5 mM	+0.1	-0.7	-0.4	-0.4	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.5	+0.4	+0.0	-0.5	-0.2
nitrogen source	nitrogen source nitrate 5mM	-1.3	-0.3	-0.2	+0.3	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-0.7	+0.3	-0.4	-0.8	+0.0
temperature shift	Temperature shift 30_to_25; with MOPS	-0.5	-0.5	-0.1	-0.7	+0.4
carbon source	Myristic (C)	-1.6	+0.0	+0.4	-0.0	+0.1
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.5	-0.1	-0.0	-0.8	-0.6
pH	pH 6	+0.6	-0.1	+0.2	-1.4	-0.1
reactor	24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO.	-1.3	-0.2	+0.3	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.6	+0.2	+0.2	+0.6	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5	+0.0	+0.2	-1.0	+0.4
phage	P. putida Sci Big MOI 0.1	-0.3	-0.7	-0.5	+1.2	+0.7
pH	Growth at pH6 and (C) D-Glucose	+1.0	+0.2	+0.1	-0.7	+0.1
carbon source	Glucose (C) (20mM)	+0.7	+0.1	+0.3	-0.7	+0.3
nitrogen source	2,6-diaminopimelic (N)	+1.1	+0.2	+0.2	+0.2	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.1	+0.1	+1.1	+0.3
nitrogen source	D-2-Aminobutyric (N)	+0.9	+0.1	-0.2	+0.2	+1.0