Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_3001	PP_3002	PP_3003	PP_3004	PP_3005
nitrogen source	D-2-Aminobutyric (N)	+0.4	-0.9	-1.6	N.D.	-1.6
nitrogen source	Urea (N)	-0.1	-1.5	-0.4	N.D.	-0.4
temperature	Growth at 30C; with MOPS	-0.3	-1.1	-0.3	N.D.	-0.6
carbon source	carbon source 4-vinylphenol 0.1 mM	+0.1	-1.4	-0.6	N.D.	-0.2
carbon source	ferulate (C); with MOPS	-0.7	+0.1	-0.8	N.D.	-0.7
temperature shift	Temperature shift 30_to_21; with MOPS	-0.6	-0.3	-0.2	N.D.	-0.9
nitrogen source	Urea (N)	+0.5	-1.1	-0.6	N.D.	-0.6
nitrogen source	no extra (N); with MOPS	+0.1	+0.1	-1.5	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-1.4	+0.4	N.D.	-0.2
temperature shift	Temperature shift 30_to_25; with MOPS	-0.4	+0.5	-0.7	N.D.	-0.7
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.4	-1.3	-0.5	N.D.	+0.1
nitrogen source	D-2-Aminobutyric (N)	-0.3	-0.8	-0.6	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	+0.3	+0.2	N.D.	-0.6
carbon source	ferulate (C); with MOPS	-0.4	+1.0	-0.4	N.D.	-1.0
carbon source	BC Lignin Sorghum 10 vol% (C)	-0.3	-0.5	-0.6	N.D.	+0.6
nitrogen source	nitrogen source nitrite 0.5mM	+0.1	-1.4	+0.4	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.8	-0.2	N.D.	-1.0
pH	Growth at pH6 and (C) Trisodium citrate	-0.2	+0.8	-0.6	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-1.2	+1.0	N.D.	-0.4
phage	P. putida Sci small MOI 0.1	+0.6	+1.0	-1.6	N.D.	-0.4
temperature shift	Temperature shift 30_to_25	+0.2	+0.7	-0.8	N.D.	-0.5
nitrogen source	2,6-diaminopimelic (N)	-0.2	+0.9	+0.4	N.D.	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.9	+0.9	N.D.	-0.2
phage	PUT 8 MOI 1	+0.4	+1.1	-0.5	N.D.	-0.7
carbon source	1,3-Butandiol (C)	-0.3	+0.8	-0.5	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.2	-0.5	N.D.	+0.1
nitrogen source	NAG (N); with MOPS	-0.2	+0.9	+0.6	N.D.	-0.7
carbon source	Myristic (C)	-0.3	+0.9	+0.3	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+1.4	-0.2	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+2.1	+0.1	N.D.	-0.2