Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2992	PP_2994	PP_2995	PP_2996	PP_2997
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.3	-0.2	-0.7	-0.4	-0.5
temperature	Growth at 25C; with MOPS	-0.3	-0.3	-0.2	+0.0	-1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	-0.2	-1.5	+0.0	-0.5
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.5	+0.4	-1.1	-0.4	-0.2
carbon source	Crotonic (C)	-0.1	-0.4	-0.4	-0.4	-0.6
carbon source	Lauric (C)	-0.5	-0.4	-0.4	-0.2	-0.2
stress	1-Pentanol 0.3 vol%	-0.5	-0.2	-0.5	-0.3	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	+0.1	-0.4	-0.3	-0.8
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	-0.4	+0.0	-0.4	-0.5	-0.2
carbon source	carbon source 3-O-methyl-glucose 10 mM	+0.1	+0.1	-0.4	-0.6	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.3	+0.3	-0.0	-0.7
phage	P. putida Sci small MOI 0.1	-0.5	-0.6	-0.0	+0.4	-0.2
carbon source	L-Leucine (C)	-0.5	+0.2	+0.2	-0.1	-0.6
carbon source	ferulate (C); with MOPS	-0.6	+0.2	-0.3	+0.4	-0.5
carbon source	ferulate (C); with MOPS	-0.6	+0.1	+0.2	-0.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.2	-0.3	+0.1	-0.8
nitrogen source	NAG (N); with MOPS	-0.5	+0.4	+0.1	-0.5	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.3	-0.5	+0.3	-0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	+0.3	-0.4	+0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.5	+0.0	-0.2	+0.3	-0.6
nitrogen source	Urea (N); with MOPS	-0.6	+0.5	+0.3	-0.0	-0.2
carbon source	4-Aminobutyric 10 mM (C)	+0.3	-0.0	-0.5	+0.5	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.9	-0.1	-0.2	+0.2	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.4	-0.2	+0.2	+0.5	+0.2
phage	P. putida Sci Big MOI 0.1	+0.6	+0.6	-1.0	+0.3	+0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.2	+0.4	-0.7	+0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.4	+0.3	-0.3	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	-0.3	+0.4	+0.2	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4	+0.6	-0.3	+0.4	-0.0
nitrogen source	2,6-diaminopimelic (N)	+0.2	+0.7	+0.3	-0.2	+0.3