Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5548	PP_2986	PP_2987	PP_2988	PP_2989
phage	P. putida South MOI 10	-2.5	+0.2	-0.0	-0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-0.3	-0.8	-0.4	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.1	+0.2	-0.7	-0.2	-0.2
nitrogen source	NAG (N); with MOPS	-1.5	+0.2	-0.9	+0.1	+0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.4	+0.0	-1.0	-0.2	-0.4
carbon source	carbon source D-Glucose 55.5 mM	-2.1	-0.3	+0.4	+0.1	+0.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs	-1.3	+0.3	+0.1	-0.4	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=72_hrs	-1.6	-0.1	+0.0	+0.3	-0.2
pH	Growth at pH9 and (C) Trisodium citrate	-0.8	+0.1	+0.1	-0.8	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.8	-0.2	+0.5	+0.2	-0.2
nitrogen source	Hippuric (N)	-0.8	+0.2	+0.2	-0.3	-0.5
pH	Growth at pH7 and (C) Trisodium citrate	+0.7	-0.2	-0.8	-0.8	-0.0
phage	P. putida Sci small MOI 0.1	-1.4	-0.1	+0.4	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.4	-0.5	-0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	+0.1	+0.5	-0.3	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	-0.8	-0.2	+0.5
pH	pH 6	+0.3	-0.2	+0.7	-0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	+0.2	-0.6	+0.1	-0.4
temperature	Growth at 30C; with MOPS	+1.0	+0.2	-0.3	-0.1	-0.3
phage	P. putida Sci Big MOI 0.1	-0.5	+0.7	+1.0	-0.8	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	+0.1	-0.7	-0.2	+0.5
phage	P. putida PUT 7 MOI 1	+0.8	+0.3	+0.5	-0.5	-0.3
carbon source	3-methyl-1-butanol 0.25 vol% (C)	+1.1	+0.5	-0.5	+0.1	-0.2
r2a control	R2A control	+1.3	+0.1	-0.5	+0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.001 mg/ml	+0.9	+0.0	-0.7	+0.3	+0.6
phage	PUT 8 MOI 1	+1.1	+0.2	+0.4	-0.2	-0.1
pH	pH 9	+0.8	-0.2	+1.2	-0.1	-0.4
carbon source	ferulate (C); with MOPS	+1.2	+0.1	+0.4	+0.0	-0.2
phage	P. putida Sci small MOI 0.1	+1.5	+0.2	+0.3	-0.2	-0.0
phage	P. putida Missley MOI 0.1	+1.8	+0.4	+0.4	+0.2	-0.2