Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2972	PP_2973	PP_2974	PP_2975	PP_2976
phage	PUT 8 MOI 1	-6.8	+0.2	+0.4	-0.3	+0.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.6	+0.1	-0.1	-0.3	-4.3
pH	Growth at pH7 and (C) D-Glucose	-6.6	-0.1	-0.0	+0.2	+1.3
temperature	Growth at 30C; with MOPS	-0.7	-0.0	+0.1	+0.1	-4.3
temperature shift	Temperature shift 10_to_25; with MOPS	-0.0	+0.0	-0.3	+0.1	-4.2
carbon source	ferulate (C); with MOPS	-0.6	+0.1	-0.1	+0.3	-4.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.4	+0.1	-0.0	-3.3
nitrogen source	nitrate (N)	+0.1	-0.2	-0.0	+0.4	-3.4
stress	Butyrolactam 2 vol%	-0.7	-0.2	-0.2	-0.3	-1.7
pH	Growth at pH7 and (C) Trisodium citrate	-3.9	+0.5	+0.2	+0.3	+0.1
temperature shift	Temperature shift 30_to_21; with MOPS	-1.2	+0.3	-0.2	-1.1	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.6	+0.2	+0.0	+0.2	-2.2
nitrogen source	Ammonium chloride and TNT (N)	+0.6	-0.4	-0.3	-0.1	-2.0
pH	Growth at pH8 and (C) Trisodium citrate	+0.5	-0.2	-0.1	+0.0	-2.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-2.2	-0.2	-0.2	+0.2	+0.5
stress	R2A with Fusaric 240 ug/mL	-0.9	+0.2	+0.3	+0.2	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.0	-0.3	+0.3	+0.2	+0.7
r2a control with 0.2% methanol	R2A control with 0.2% methanol	-1.6	-0.5	+0.3	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.8	-0.4	-0.1	-0.1	+1.3
phage	P. putida Sci Big MOI 0.1	+0.8	+0.6	-0.1	+0.4	-2.6
nitrogen source	no extra (N); with MOPS	-1.4	-0.6	-0.1	+0.1	+1.4
temperature shift	Temperature shift 30_to_34; with MOPS	-1.4	-0.4	+0.0	+0.2	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.0	+0.3	+0.1	-0.9	-0.7
temperature shift	Temperature shift 30_to_25; with MOPS	-1.4	-0.1	-0.0	+0.4	+1.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	+1.4	+0.1	+0.0	+0.3	-1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	-0.4	-0.1	+0.1	+2.2
pH	pH 9	+0.8	-0.4	+0.1	+0.4	+1.8
carbon source	carbon source 3-O-methyl-glucose 50 mM	+1.4	-0.3	-0.1	+0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.5	+0.1	+0.0	+0.2	+0.4
pH	pH 6	+1.4	-0.3	+0.0	+0.4	+1.9