Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2969	PP_2970	PP_2971	PP_2972	PP_2973
pH	Growth at pH7 and (C) D-Glucose	-0.5	-0.7	-0.1	-6.6	-0.1
phage	PUT 8 MOI 1	-0.1	+0.6	+0.2	-6.8	+0.2
pH	Growth at pH7 and (C) Trisodium citrate	-0.2	+0.0	-0.4	-3.9	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-2.1	+0.1	-2.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-1.3	+0.4	-1.8	-0.4
nitrogen source	no extra (N); with MOPS	+0.3	-1.1	-0.1	-1.4	-0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.1	-0.3	-2.3	+0.1
carbon source	D-Glucose (C) with 20AA_mix_minus_Cys	+0.1	-1.6	-0.2	-0.7	-0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.2	+1.0	-0.5	-2.2	-0.2
r2a control with 0.2% methanol	R2A control with 0.2% methanol	+0.2	+0.5	+0.2	-1.6	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	+0.9	+0.0	+0.1	-0.7
no stress control	Growth with no stress	-0.6	+0.3	+0.6	-1.2	+0.1
carbon source	D-Glucose (C)	-0.3	-1.8	+0.0	+1.0	+0.4
temperature shift	Temperature shift 30_to_34; with MOPS	+0.1	+0.8	+0.2	-1.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-1.3	-0.1	+0.9	-0.3
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.1	+0.9	+0.3	-1.4	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-0.0	+1.1	-1.0	-0.7	+0.0
temperature shift	Temperature shift 30_to_25; with MOPS	-0.2	-1.2	+0.2	+1.4	-0.1
pH	pH 9	-0.8	+0.7	+0.0	+0.8	-0.4
phage	P. putida PUT 7 MOI 1	+0.6	-1.7	+0.2	+1.2	+0.0
phage	P. putida Sci small MOI 0.1	-1.5	-0.3	+0.6	+1.2	+0.4
pH	Growth at pH6 and (C) D-Glucose	-0.8	+0.6	+0.4	+0.8	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	+1.5	-0.0	-1.1	+0.3
phage	P. putida Sci Big MOI 0.1	+0.1	-1.5	+0.6	+0.8	+0.6
carbon source	carbon source D-Glucose 55.5 mM	-0.6	-0.4	+0.5	+1.6	-0.4
stress	R2A with Fusaric 240 ug/mL	+0.4	+1.3	-0.3	-0.9	+0.2
pH	pH 6	-0.7	+0.7	-0.0	+1.4	-0.3
nitrogen source	nitrogen source nitrite 0.5mM	+0.4	+1.1	+0.2	+1.0	-0.0
nitrogen source	2,6-diaminopimelic (N)	+0.5	+0.9	+0.7	+0.4	+0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+0.8	+0.6	+2.5	+0.1