Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2927	PP_2928	PP_2929	PP_2930	PP_2931
pH	Growth at pH7 and (C) D-Glucose	-0.1	-1.5	-0.9	-0.6	-0.7
pH	Growth at pH6 and (C) D-Glucose	-0.4	-0.3	-0.5	-1.0	-1.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.4	-0.9	-1.8	-0.2	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.4	-0.1	-0.3	-2.8	-0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.5	-1.2	-1.4	-0.3	-0.3
carbon source	D-Glucose (C) with 20AA_mix_minus_Arg	-0.3	-1.4	-1.5	-0.0	-0.4
carbon source	Sorghum Hydrolysate (C)	-0.2	-1.3	-1.6	-0.3	-0.1
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.2	-1.6	-2.0	+0.4	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.7	-1.5	+0.1	-0.5
carbon source	D-Glucose (C) with 20AA_mix_minus_Gly	-0.5	-1.6	-1.1	+0.2	-0.2
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.2	-1.7	-1.6	+0.3	+0.0
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM	-0.2	-1.7	-1.5	+0.3	-0.0
stress	R2A with Fusaric 480 ug/mL	-0.3	-1.0	-1.6	-0.3	+0.2
stress	Growth with Chloride 200 mM; with MOPS	-0.2	-1.7	-1.0	-0.4	+0.3
pH	Growth at pH8 and (C) D-Glucose	+0.4	-1.1	-1.3	-0.1	-0.7
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-1.6	-1.7	-0.1	+0.8
nitrogen source	Propandiamine (N)	+0.3	-1.4	-2.2	+0.2	+0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.0	-1.1	-1.2	-1.0	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.7	-1.2	+0.4	-1.4
stress	R2A with Fusaric 480 ug/mL	+0.2	-1.3	-1.1	-0.6	+0.4
stress	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL	+0.6	-1.2	-1.3	-0.4	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.7	-1.0	-1.1	+0.5	+0.2
nitrogen source	Ammonium chloride (N)	+0.4	-1.0	-1.2	+0.0	+0.7
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-1.2	-2.1	+1.1	+1.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-1.2	-0.9	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	-0.7	-1.2	-0.1	+0.4
phage	P. putida South MOI 0.1	-0.3	+0.9	+1.4	-0.1	-1.6
nitrogen source	DL-2-Aminobutyric (N)	+0.0	+1.4	+2.0	-0.0	-0.4
phage	P. putida South MOI 1	+0.2	+1.0	+1.7	+0.0	+0.5
nitrogen source	DL-2-Aminobutyric (N)	+0.4	+1.4	+2.1	-0.0	-0.1