Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2916	PP_2918	PP_2919	PP_2920	PP_2921
nitrogen source	Butyrolactam (N)	-0.0	+0.1	-4.6	-4.7	-4.4
nitrogen source	Butyrolactam (N)	-0.0	+0.0	-3.8	-4.3	-4.4
nitrogen source	Propiolactam (N)	+0.1	+0.6	-3.2	-4.4	-4.6
nitrogen source	Propiolactam (N)	+0.8	+0.5	-2.7	-3.1	-3.7
pH	Valerolactone (C) pH 6.5	-0.9	-0.1	-0.1	-0.5	-0.4
nitrogen source	2,6-diaminopimelic (N)	-0.9	-0.4	+0.5	-0.8	-0.2
carbon source	carbon source 4-vinylphenol 0.01 mM	-0.8	-0.2	-0.3	-0.2	-0.5
carbon source	carbon source D-Glucose 55.5 mM	-1.2	-0.5	+0.1	-0.0	-0.3
nitrogen source	Imidazole (N)	-0.8	-0.2	-0.4	+0.0	-0.4
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	-0.5	-0.2	-0.6	-0.3	+0.3
phage	P. putida South MOI 10	-0.5	-0.2	+0.5	-0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-0.0	-0.4	+0.3	-1.2
carbon source	Valerolactone (C)	-0.3	-0.2	+0.3	-0.2	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	+0.2	+0.1	+0.3	-0.5
nitrogen source	NAG (N); with MOPS	-0.7	-0.2	+0.5	+0.4	-0.4
pH	Growth at pH9 and (C) Trisodium citrate	-0.9	-0.1	+0.3	+0.3	-0.1
pH	pH 7	-0.9	-0.1	+0.1	+0.5	-0.1
pH	Growth at pH7 and (C) Trisodium citrate	-0.9	-0.4	-0.1	+0.5	+0.5
carbon source	Acetate Carbon Source (20mM)	+0.3	+0.2	+0.3	-0.4	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-1.0	-0.1	-0.6	+1.1	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5	-0.3	+0.5	-0.1	-0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.5	-0.0	-0.4	+0.5	-0.4
nitrogen source	D-2-Aminobutyric (N)	-0.3	+0.2	-0.3	+0.8	-0.1
phage	P. putida Sci small MOI 0.1	-0.4	-0.1	-0.0	+0.8	+0.3
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.2	+0.1	+0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.1	-0.5	+0.7	+1.2
pH	Growth at pH6 and (C) D-Glucose	+0.3	-0.3	+0.4	+0.5	-0.2
carbon source	D-Glucose (C)	-0.3	+0.2	+0.4	+0.7	-0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-2	+0.4	+0.3	-0.7	+0.7	+0.6
pH	Growth at pH7 and (C) D-Glucose	+0.4	-0.2	+0.5	+0.6	+0.0