Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2896	PP_2898	PP_2899	PP_2900	PP_2901
nitrogen source	NAG (N); with MOPS	-0.2	-0.7	-4.3	-3.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	-2.6	-1.9	-2.6	-0.2
nitrogen source	D-2-Aminobutyric (N)	+0.8	-0.8	-3.2	-4.0	+0.3
carbon source	D-Glucose (C)	+0.2	-1.5	-4.2	-0.4	+0.2
nitrogen source	nitrogen source Ammonium chloride 20mM	+0.0	-1.4	-3.9	-0.1	+0.1
phage	P. putida Missley MOI 0.1	-0.0	-0.6	-4.1	-0.1	+0.0
pH	Growth at pH7 and (C) Trisodium citrate	-0.3	-0.0	-4.3	+0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.2	-1.7	-1.5	-0.3
temperature shift	Temperature shift 30_to_21; with MOPS	-0.0	-0.7	+0.6	-4.3	+0.2
temperature shift	Temperature shift 10_to_30	+0.4	-1.9	-0.5	-1.7	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.4	-3.2	-0.1	-0.0
temperature shift	Temperature shift 30_to_21; with MOPS	+0.1	-0.7	-2.6	-0.6	+0.1
pH	Growth at pH6 and (C) D-Glucose	+0.1	+0.8	-4.4	-0.1	+0.1
phage	P. putida PUT 7 MOI 1	-0.9	-0.7	+0.8	-2.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-1.0	+0.2	-2.6	+0.3
nitrogen source	NAG (N); with MOPS	+0.1	-1.5	-0.8	-0.9	+0.4
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.1	+0.2	-2.4	-0.7	+0.2
phage	P. putida South MOI 10	-0.3	-0.4	-2.3	+0.7	-0.1
pH	Growth at pH6 and (C) D-Glucose	-0.4	+0.4	-2.0	-0.6	+0.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	-0.5	-2.9	+1.0	+0.4	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	-0.9	-1.8	+0.6	+0.2
phage	P. putida Sci Big MOI 0.1	+0.2	-2.4	-0.8	+0.6	+0.5
nitrogen source	Propandiamine (N)	+0.6	-0.2	-2.2	+0.4	+0.2
temperature shift	Temperature shift 30_to_25; with MOPS	-0.1	-2.4	+1.1	+0.3	-0.0
carbon source	Myristic (C)	-0.5	+0.7	-1.4	+1.1	+0.2
nitrogen source	2,6-diaminopimelic (N)	-1.1	-0.7	+1.1	+0.8	+0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-1	+0.5	-1.1	+1.3	+1.0	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+2.2	-0.4	+0.9	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	-0.3	+0.3	+2.6	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.8	+0.1	+0.7	+2.6	-0.3