Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2882 and PP_2883 overlap by 28 nucleotidesPP_2883 and PP_2884 are separated by 2 nucleotidesPP_2884 and PP_2885 are separated by 81 nucleotidesPP_2885 and PP_2886 are separated by 57 nucleotides PP_2882: PP_2882 - putative 2-hydroxychromene-2-carboxylate isomerase, at 3,281,479 to 3,282,093 _2882 PP_2883: PP_2883 - conserved protein of unknown function, at 3,282,066 to 3,282,365 _2883 PP_2884: PP_2884 - XRE family transcriptional regulator, at 3,282,368 to 3,282,913 _2884 PP_2885: PP_2885 - putative Transporter, at 3,282,995 to 3,284,224 _2885 PP_2886: PP_2886 - putative Cytochrome b561, at 3,284,282 to 3,284,815 _2886
Group Condition PP_2882 PP_2883 PP_2884 PP_2885 PP_2886
phage PUT 8 MOI 1 +0.5 -5.0 +0.6 -0.7 -0.3
carbon source ferulate (C); with MOPS +0.5 -4.4 -0.3 -0.4 +0.1
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.5 -3.6 -1.2 +0.0 -0.3
temperature Growth at 30C; with MOPS -0.4 -3.1 -0.0 -0.6 -0.1
pH Growth at pH6 and (C) Trisodium citrate -1.0 -1.3 -0.8 -0.8 -0.0
phage P. putida Sci small MOI 0.1 -2.2 -0.1 -0.5 -0.1 -1.1
temperature shift Temperature shift 30_to_25; with MOPS -1.6 -2.2 +0.3 -0.5 +0.0
pH pH 7 -1.3 -1.6 -0.7 +0.1 -0.4
nitrogen source 2,6-diaminopimelic (N) -0.5 -3.3 +0.1 +0.2 -0.1
nitrogen source Urea (N) -0.9 -2.1 +0.2 -0.5 -0.0
carbon source D-Glucose (C) -0.3 -3.0 -0.1 +0.1 +0.0
pH Growth at pH8 and (C) D-Glucose -0.3 -2.0 -0.3 -0.5 -0.2
nitrogen source Propiolactam (N) -0.9 -1.6 -0.0 -0.5 +0.3
carbon source ferulate (C); with MOPS +0.5 -1.2 -1.9 -0.4 +0.4
carbon source DL-3-Hydroxybutyric (C) +0.5 -2.9 -0.2 +0.2 +0.3
phage P. putida Sci Big MOI 0.1 -0.4 +0.9 -1.5 -0.9 -0.1
stress MOPS minimal media_Glucose20mM with Chloride 200 mM +0.7 -2.8 +0.3 -0.1 -0.0
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +1.1 -1.6 -0.3 +0.4 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 -1.2 -1.1 +2.1 -0.5 -0.1
micoeukaryotes C.elegans, mixed culture-1 +0.5 -0.7 +2.0 -0.2 +0.2
nitrogen source Caprolactam (N) +0.1 -0.3 +3.2 +0.1 -0.1
nitrogen source 1,6-Hexanediamine (N) -0.2 +0.3 +3.3 -0.1 -0.0
nitrogen source Caprolactam (N) +0.2 -0.1 +3.1 +0.3 -0.2
nitrogen source 1,6-Hexanediamine (N) +0.0 +0.6 +3.4 -0.0 -0.0
nitrogen source Propandiamine (N) -0.4 +1.0 +3.4 -0.0 +0.2
nitrogen source Propandiamine (N) +0.3 +0.5 +3.2 +0.4 -0.2
nitrogen source 6-aminocaproic (N) +0.2 -0.6 +4.7 +0.6 -0.1
nitrogen source Caprolactam (N) +0.1 -0.2 +5.1 -0.1 +0.1
nitrogen source 6-aminocaproic (N) +0.4 -0.1 +4.7 +0.4 +0.0
nitrogen source Caprolactam (N) +0.0 +0.6 +5.1 +0.1 -0.1
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