Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2878	PP_2879	PP_2880	PP_2881	PP_2882
carbon source	L-Leucine (C)	-3.6	+0.1	-2.1	-0.2	-0.0
nitrogen source	nitrogen source nitrite 1mM	+0.3	-0.3	-3.9	+0.2	-0.7
stress	R2A with Fusaric 480 ug/mL	-1.1	-0.3	-2.7	+0.0	-0.2
pH	Growth at pH6 and (C) D-Glucose	-2.5	+0.2	-1.2	+0.0	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.5	-0.3	-3.4	-0.4	+0.1
phage	P. putida PUT 7 MOI 1	-1.0	-0.5	-1.2	-0.2	-0.6
phage	P. putida Sci small MOI 0.1	-0.4	+0.1	-1.1	+0.2	-2.2
pH	Growth at pH9 and (C) Trisodium citrate	-0.8	+0.4	-1.4	+0.0	-1.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-3.8	+0.2	-0.2	-0.0	+0.5
pH	Growth at pH7 and (C) D-Glucose	-0.9	+0.1	-2.3	+0.2	-0.3
carbon source	ferulate (C); with MOPS	-0.3	-0.1	-2.2	-1.0	+0.5
temperature shift	Temperature shift 30_to_25; with MOPS	-1.2	+0.0	-0.6	+0.3	-1.6
nitrogen source	Urea (N)	-1.2	+0.1	-1.2	+0.2	-0.9
pH	Growth at pH7 and (C) Trisodium citrate	-1.8	+0.5	-1.4	-0.3	+0.1
temperature shift	Temperature shift 10_to_25; with MOPS	-0.5	-0.0	-2.6	-0.2	+0.9
temperature	Growth at 30C	-2.4	+0.4	-0.6	+0.3	-0.0
temperature	Growth at 30C; with MOPS	+0.4	+0.0	-2.7	+0.3	-0.3
phage	P. putida Sci Big MOI 0.1	-1.7	+0.4	-0.8	+0.2	-0.4
temperature shift	Temperature shift 10_to_25; with MOPS	-1.5	+0.1	+0.1	+0.4	-1.4
nitrogen source	Urea (N); with MOPS	+0.3	+0.1	-2.3	+0.3	-0.6
carbon source	D-Glucose (C)	-2.2	+0.3	-0.4	+0.5	-0.2
temperature shift	Temperature shift 10_to_30; with MOPS	-1.6	+0.0	+0.4	+0.3	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	+1.0	-1.6	+0.0	+0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	+0.1	+1.3	+0.2	-1.7
phage	P. putida Missley MOI 0.1	+1.1	+0.1	-1.8	-0.6	+0.8
temperature shift	Temperature shift 30_to_21; with MOPS	+1.2	+0.3	-1.5	+0.1	-0.1
pH	pH 7	+0.9	+0.3	+1.0	+0.2	-1.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+1.1	+0.3	+0.6	+0.4	-1.2
carbon source	carbon source 2-Deoxy-D-glucose 100 mM	+0.5	+0.6	+1.7	+0.2	-1.1
carbon source	carbon source D-Glucose 55.5 mM	+0.9	+0.2	+1.8	-0.2	-0.5