Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2847	PP_2848	PP_2849	PP_2851	PP_2852
phage	PUT 8 MOI 1	-4.9	-0.4	+0.0	-0.2	+0.2
temperature	Growth at 25C	-3.4	-1.4	+0.2	+0.2	-0.1
time series	Timeseries; MIN condition; Bioreplicate 1; Time 7hrs; Measurement	-4.0	-0.3	-0.0	-0.0	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-3.9	+0.0	+0.3	-0.1	-0.2
pH	pH 9	-2.2	-1.0	-0.5	+0.2	-0.3
phage	P. putida PUT 7 MOI 1	-2.5	+0.4	-0.3	-0.5	-0.4
phage	P. putida Sci small MOI 0.1	-3.2	+0.0	+0.4	-0.7	+0.2
pH	pH 8	-0.3	-1.5	-1.1	-0.4	+0.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	-1.7	-1.2	-0.3	+0.5	-0.4
pH	pH 7	-1.7	-0.4	-0.7	-0.4	+0.2
nitrogen source	2,6-diaminopimelic (N)	-0.5	-1.9	-0.3	-0.1	-0.0
nitrogen source	2,6-diaminopimelic (N)	-0.6	-1.0	-0.3	-0.8	-0.1
nitrogen source	D-2-Aminobutyric (N)	-1.5	-1.6	+0.3	+0.3	+0.4
phage	PUT8 MOI 0.1	-1.0	-1.2	-0.2	-0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	-0.9	-0.4	+0.2	+0.1
micoeukaryotes	Tetrahymena sp., Mixed culture-1	-1.7	-0.3	+0.1	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.7	-0.0	-0.3	+0.4	-0.2
carbon source	ferulate (C); with MOPS	-2.4	+0.1	+0.4	+0.2	-0.1
phage	P. putida Sci Big MOI 0.1	-2.3	+1.2	-0.1	-0.1	-0.3
phage	P. putida Missley MOI 0.1	+1.1	-1.5	-0.1	-0.2	-0.6
carbon source	Acetate Carbon Source (20mM)	-2.4	+1.0	+0.3	+0.1	+0.1
carbon source	carbon source D-Glucose 55.5 mM	-1.1	+1.1	-0.5	-0.0	-0.0
pH	Growth at pH8 and (C) Trisodium citrate	+1.1	-1.0	-0.2	-0.2	-0.2
nitrogen source	nitrate (N)	+1.0	-1.0	+0.2	-0.4	-0.2
pH	Valerolactone (C) pH 6.5	+1.3	-1.7	+0.3	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+1.1	-0.1	+0.4	-0.2
temperature	Growth at 25C	+1.2	-0.9	+0.4	+0.3	-0.3
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+1.6	+0.2	-0.7	+0.0	-0.1
temperature shift	Temperature shift 30_to_21; with MOPS	+1.3	-0.7	+0.5	+0.2	+0.1
carbon source	D-Glucose (C)	+1.2	+0.7	+0.3	+0.2	+0.1