Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2842 and PP_2843 are separated by 9 nucleotidesPP_2843 and PP_2844 are separated by 19 nucleotidesPP_2844 and PP_2845 overlap by 4 nucleotidesPP_2845 and PP_2846 are separated by 9 nucleotides PP_2842: PP_2842 - urease accessory protein, at 3,246,902 to 3,247,735 _2842 PP_2843: PP_2843 - urease subunit gamma, at 3,247,745 to 3,248,047 _2843 PP_2844: PP_2844 - Urease subunit beta, at 3,248,067 to 3,248,384 _2844 PP_2845: PP_2845 - urease subunit alpha, at 3,248,381 to 3,250,084 _2845 PP_2846: PP_2846 - urease accessory protein, at 3,250,094 to 3,250,597 _2846
Group Condition PP_2842 PP_2843 PP_2844 PP_2845 PP_2846
pH Growth at pH7 and (C) Trisodium citrate -0.0 N.D. -2.5 +0.2 -1.0
carbon source ferulate (C); with MOPS -0.5 N.D. -0.6 -0.9 -1.3
phage P. putida PUT 7 MOI 1 -1.6 N.D. -0.4 -0.5 -0.8
phage P. putida Sci small MOI 0.1 -0.9 N.D. -2.8 -0.5 +1.1
pH Growth at pH8 and (C) D-Glucose -0.2 N.D. -1.6 -0.9 -0.2
carbon source ferulate (C); with MOPS -0.9 N.D. -1.2 +0.0 -0.5
pH Growth at pH6 and (C) Trisodium citrate -0.3 N.D. +0.1 -1.8 -0.4
nitrogen source Ammonium chloride (N) +0.1 N.D. -0.2 +0.4 -2.6
temperature shift Temperature shift 10_to_25; with MOPS -0.3 N.D. -1.2 -0.0 -0.8
nitrogen source Urea (N) -0.0 N.D. -0.7 -0.8 -0.8
phage P. putida Sci Big MOI 0.1 -0.5 N.D. -0.8 +0.5 -1.3
carbon source D-Glucose (C); with MOPS -0.3 N.D. -0.7 -0.7 -0.3
carbon source acetate (C) +0.3 N.D. -1.9 -0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 N.D. -0.3 -0.3 -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. -0.7 +0.2 -0.8
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.2 N.D. -0.8 -0.2 -0.9
phage P. putida Missley MOI 0.1 -1.8 N.D. +0.8 +0.1 -0.7
pH Growth at pH6 and (C) D-Glucose -0.8 N.D. +0.3 -0.3 -0.7
carbon source Ethyl decanoate (C) +0.2 N.D. -1.0 +0.2 -0.7
phage P. putida Sci small MOI 0.1 +0.8 N.D. -0.2 -1.0 -0.8
carbon source Trisodium citrate (C) -0.2 N.D. +0.6 -1.1 -0.4
carbon source carbon source D-Glucose 55.5 mM +0.2 N.D. +0.5 +0.0 -1.8
temperature shift Temperature shift 30_to_4; with MOPS -0.5 N.D. -0.3 +0.6 -0.7
carbon source D-Glucose (C) -0.1 N.D. -0.9 -0.5 +0.6
pH pH 7 +0.3 N.D. +0.5 -0.5 -1.2
stress Growth with Chloride 500 mM; with MOPS -0.7 N.D. -0.9 +0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 N.D. -0.7 -0.2 -0.6
stress R2A with Polymyxin B sulfate 0.001 mg/ml -0.3 N.D. -0.6 +0.8 +0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 N.D. +0.6 -0.1 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 N.D. +0.6 +0.0 +1.5
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