Fitness for 5 genes in Pseudomonas putida KT2440

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 989 experiments or choose conditions or try the comparative fitness browser

500 ntPP_2836 and PP_2837 are separated by 90 nucleotidesPP_2837 and PP_2838 are separated by 124 nucleotidesPP_2838 and PP_2839 overlap by 31 nucleotidesPP_2839 and PP_2840 are separated by 100 nucleotides PP_2836: PP_2836 - putative 2-keto-3-deoxyxylonate dehydratase, at 3,237,562 to 3,238,779 _2836 PP_2837: PP_2837 - putative uronate transporter, at 3,238,870 to 3,240,180 _2837 PP_2838: PP_2838 - conserved protein of unknown function, at 3,240,305 to 3,241,954 _2838 PP_2839: PP_2839 - conserved protein of unknown function, at 3,241,924 to 3,244,212 _2839 PP_2840: PP_2840 - putative Membrane protein, at 3,244,313 to 3,245,494 _2840
Group Condition PP_2836 PP_2837 PP_2838 PP_2839 PP_2840
phage P. putida Sci small MOI 0.1 +0.8 -0.9 -0.3 -0.4 -2.6
nitrogen source 2,6-diaminopimelic (N) -0.6 -0.0 -0.6 -0.1 -1.6
phage P. putida Sci small MOI 0.1 -0.6 -0.6 -0.7 -0.4 -0.3
phage P. putida Sci Big MOI 0.1 -1.2 +0.3 -0.2 -0.3 -1.1
stress R2A with Fusaric 240 ug/mL -0.9 -0.3 -0.6 -0.1 -0.4
phage P. putida Missley MOI 0.1 -1.2 -0.8 -0.1 -0.3 +0.3
carbon source ferulate (C); with MOPS +0.1 -0.2 +0.1 +0.0 -1.8
mixed carbon source mixed (C)s Trisodium citrate 10 mM and L-Phenylalanine 5 mM -0.8 -0.2 -0.3 +0.1 -0.5
carbon source acetate (C) -1.4 -0.4 +0.1 +0.1 -0.2
phage P. putida PUT 7 MOI 1 -0.4 +0.1 -1.4 -0.1 -0.0
nitrogen source Urea (N); with MOPS -0.7 -0.7 -0.2 -0.1 -0.0
pH pH 9 -0.6 -0.1 -0.3 -0.1 -0.5
pH pH 7 -0.7 -0.2 -0.2 -0.2 -0.2
nitrogen source Urea (N) +0.1 -0.4 -0.3 -0.1 -0.8
temperature shift Temperature shift 30_to_25 +0.2 -0.3 -0.2 -0.4 -0.7
nitrogen source Propandiamine (N) -0.6 -0.7 -0.0 +0.2 -0.1
temperature shift Temperature shift 30_to_21; with MOPS +0.3 -0.3 +0.1 -0.2 -1.0
carbon source 1,3-Butandiol (C) -0.9 +0.3 -0.5 +0.2 +0.2
pH Growth at pH9 and (C) D-Glucose +0.3 -0.4 -0.1 +0.2 -0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 -0.1 +0.5 -0.4 -0.8
carbon source Tween 20 (C) +0.4 -0.3 +0.2 -0.2 -0.6
carbon source D-Glucose (C); with MOPS +0.6 -0.5 +0.0 -0.1 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -0.2 -0.3 +0.1 +0.8
no stress control Growth with no stress +0.7 +0.0 -0.5 +0.3 -0.5
stress Growth with Chloride 500 mM; with MOPS +0.8 -0.7 +0.2 +0.0 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 -0.0 +0.5 -0.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.0 +0.0 +0.7 -0.6
nitrogen source D-2-Aminobutyric (N) +0.6 +0.1 +0.5 -0.4 +0.1
pH Growth at pH6 and (C) D-Glucose +1.0 -0.1 +0.2 -0.1 +0.6
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.8 -0.1 +0.7 -0.1 +0.3
remove
PP_2836
plot		 remove
PP_2837
plot		 remove
PP_2838		 remove
PP_2839
plot		 remove
PP_2840
plot