Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_5539	PP_2823	PP_2824	PP_2825	PP_2826
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.2	-0.5	+0.3	-2.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.9	-0.7	-0.6	-0.1
pH	Growth at pH6 and (C) Trisodium citrate	-0.1	-0.5	-0.8	+0.1	-0.9
carbon source	3-methyl-1-butanol 0.1 vol% (C)	-0.3	-0.5	-0.6	-0.2	-0.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.3	-0.3	-0.6	-0.6	-0.7
phage	P. putida Sci small MOI 0.1	-1.0	-0.5	+0.1	-0.2	-0.3
phage	PUT 8 MOI 1	-0.4	-0.0	-0.8	+0.3	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	-0.0	-0.1	-0.8	+0.5	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	+0.4	-1.3	-0.4	-0.1
pH	D-Glucose (C) pH 6.5	+0.1	-0.7	-0.6	-0.4	+0.4
carbon source	L-Lysine (C)	-0.1	-0.0	+0.5	-0.3	-1.1
nitrogen source	D-2-Aminobutyric (N)	-0.0	+0.3	-0.9	-0.3	+0.5
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.1	+0.3	-0.4	-0.5	+0.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.2	-0.3	-0.8	+0.1	+0.8
nitrogen source	Ammonium chloride (N)	+0.2	+0.5	-0.4	-0.7	+0.5
phage	P. putida PUT 7 MOI 1	-0.6	+0.7	-0.4	-0.2	+0.8
carbon source	ferulate (C); with MOPS	+0.2	+0.1	-1.3	+0.3	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.5	-0.1	-0.6	-0.3	+1.2
temperature	Growth at 30C; with MOPS	+0.1	+0.2	-0.8	+0.2	+1.0
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.4	+0.8	-0.4	+0.3	-0.3
carbon source	D-Glucose (C)	-0.2	+0.1	-0.6	+0.5	+1.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.1	+0.1	-0.4	-0.2	+1.4
pH	Growth at pH6 and (C) Trisodium citrate	+0.0	+0.6	+1.0	-0.2	-0.2
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.3	+0.9	+0.6	+0.2	-0.2
temperature	Growth at 25C	-0.1	+0.5	+0.4	-0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+1.6	+0.7	-0.0	-1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.3	+0.4	+0.3	+0.9
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs	+0.2	+0.5	-0.3	+0.3	+1.0
nitrogen source	NAG (N); with MOPS	+0.3	+0.2	+1.2	-0.0	+0.6
pH	Growth at pH6 and (C) D-Glucose	+0.1	+0.2	+0.8	+0.7	+0.6