Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2816	PP_2817	PP_2818	PP_2819	PP_2820
carbon source	3-methyl-1-butanol 0.1 vol% (C)	+0.2	-0.5	-0.2	-0.0	-5.5
nitrogen source	D-2-Aminobutyric (N)	-0.9	-0.1	-0.1	-0.6	-3.5
nitrogen source	D-2-Aminobutyric (N)	+0.1	-0.4	-0.3	-0.6	-3.2
carbon source	Vanillin (C)	-0.9	-0.1	+0.0	-0.4	-3.0
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	-0.5	+0.0	+0.1	-0.1	-3.7
carbon source	Delta-Undecalactone (C)	+1.0	-2.5	-2.3	-0.2	-0.1
carbon source	Delta-Undecalactone (C)	+0.1	-1.6	-1.7	-0.5	-0.3
carbon source	3-methyl-1-butanol (C)	-1.0	+0.1	-0.1	-0.1	-2.8
temperature shift	Temperature shift 10_to_25; with MOPS	-0.7	+0.1	-0.2	+0.1	-2.7
mixed carbon source	mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM	-0.3	-0.3	-0.1	-0.9	-1.9
carbon source	Vanillin (C)	-0.8	-0.1	+0.0	+0.0	-2.7
nitrogen source	NAG (N); with MOPS	-1.8	-0.1	-0.3	+0.6	-1.8
carbon source	ferulate (C); with MOPS	-1.0	-0.2	-0.0	-0.4	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.3	+0.0	+0.7	-2.8
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-0.0	+0.2	+0.1	-3.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	-0.8	+0.6	-0.2	+0.3	-2.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.4	-0.2	-0.2	-0.7	-2.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-0.5	+0.8	-0.4	-2.7
carbon source	carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM	+0.5	-0.7	-0.2	+0.0	-2.1
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs	+0.3	+0.1	+0.1	+0.3	-3.1
nitrogen source	Hippuric (N)	+0.5	-0.1	-0.0	-0.2	-2.4
nitrogen source	Hippuric (N)	+0.2	-0.2	-0.1	+0.5	-2.4
carbon source	Tween 20 (C)	+0.1	+0.3	+0.2	-0.7	-2.1
carbon source	acetate (C)	+0.6	-0.4	-0.1	-0.7	-1.4
pH	pH 6	+0.5	+0.1	-0.0	+0.1	-2.6
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs	-0.6	+0.5	+0.2	-1.2	-0.8
carbon source	1,3-Hexanediol (C)	+0.7	+0.0	-0.1	+0.3	-2.7
phage	P. putida Sci small MOI 0.1	-0.1	-0.2	-0.4	-1.6	+1.3
carbon source	L-Lysine (C)	+0.8	+0.2	-0.1	+0.4	-2.2
carbon source	Delta-Decalactone (C)	+1.3	-0.7	-0.6	-0.1	+0.7