Fitness for 5 genes in Pseudomonas putida KT2440

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PP_2805	PP_2806	PP_2807	PP_2808	PP_2809
carbon source	Delta-Undecalactone (C)	-0.1	-3.4	+0.0	-0.2	-1.1
carbon source	Delta-Undecalactone (C)	+0.2	-3.9	-0.3	-0.1	-0.4
carbon source	ferulate (C); with MOPS	-0.0	-3.8	-0.5	+0.1	+0.1
carbon source	ferulate (C); with MOPS	-0.1	-2.6	-0.0	-0.1	-0.8
pH	Valerolactone (C) pH 6.5	-0.4	-1.1	-0.3	-0.0	-1.4
carbon source	Delta-Dodecalactone (C)	+0.1	-2.8	-0.0	-0.1	-0.4
carbon source	Delta-Dodecalactone (C)	+0.1	-2.8	+0.1	+0.1	-0.5
carbon source	ferulate (C); with MOPS	+0.1	-2.9	+0.2	+0.1	-0.1
carbon source	DL-3-Hydroxybutyric (C)	-0.1	-1.8	+0.0	-0.2	-0.4
carbon source	DL-3-Hydroxybutyric (C)	-0.2	-1.6	-0.2	+0.0	-0.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.2	-1.4	-0.8	-0.2	+0.4
micoeukaryotes	Tetrahymena sp., Mixed culture-2	-0.2	-1.1	-0.5	-0.1	+0.3
carbon source	Myristic (C)	+0.2	-0.7	-0.8	+0.2	-0.5
pH	Growth at pH7 and (C) D-Glucose	-0.2	-0.6	+0.3	+0.2	-1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.7	-1.0	+0.0	-0.1	-0.9
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	-1.5	-0.4	-0.1	+0.8
carbon source	carbon source 3-O-methyl-glucose 50 mM	-0.0	+0.6	+0.6	+0.1	-2.4
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs	+0.4	-1.7	-0.0	+0.1	+0.2
soil	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs	+0.4	-0.7	+0.4	+0.2	-0.7
pH	pH 4	+0.6	+0.7	+0.5	+0.0	-1.3
phage	P. putida Sci small MOI 0.1	-0.0	+0.9	-0.6	+0.4	+0.6
phage	P. put South MOI 10	-0.4	+0.7	+0.5	+0.2	+0.5
carbon source	carbon source 2-Deoxy-D-glucose 10 mM	+0.6	+1.0	+0.6	-0.1	-0.3
phage	P. putida Sci small MOI 0.1	+0.1	+0.6	+0.3	+0.4	+1.0
carbon source	Ethyl decanoate and D-Glucose (C)s	+0.2	+2.5	-0.2	+0.2	-0.2
phage	P. putida Sci Big MOI 0.1	+0.5	+1.1	+0.5	+0.8	-0.4
carbon source	Ethyl decanoate (C)	+0.2	+3.3	-0.2	-0.0	-0.7
phage	P. putida PUT 7 MOI 1	+0.7	+0.6	+0.7	+0.6	+1.0
carbon source	Ethyl decanoate and D-Glucose (C)s	+0.5	+3.2	-0.0	+0.2	-0.3
carbon source	Ethyl decanoate (C)	+0.3	+3.3	+0.0	+0.3	-0.1