Fitness for 5 genes in Pseudomonas putida KT2440

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500 ntPP_2779 and PP_2780 overlap by 4 nucleotidesPP_2780 and PP_2781 overlap by 4 nucleotidesPP_2781 and PP_2782 are separated by 30 nucleotidesPP_2782 and PP_2783 are separated by 9 nucleotides PP_2779: PP_2779 - putative Beta-ketoacyl synthase, at 3,164,490 to 3,165,572 _2779 PP_2780: PP_2780 - 3-oxoacyl-(Acyl-carrier-protein) synthase II, at 3,165,569 to 3,166,867 _2780 PP_2781: PP_2781 - putative beta-ketoacyl synthase, at 3,166,864 to 3,168,075 _2781 PP_2782: PP_2782 - Pyridoxalphosphate dependent aminotransferase, class III, at 3,168,106 to 3,170,985 _2782 PP_2783: PP_2783 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 3,170,995 to 3,171,732 _2783
Group Condition PP_2779 PP_2780 PP_2781 PP_2782 PP_2783
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.3 N.D. -0.3 -0.2 N.D.
temperature shift Temperature shift 30_to_25; with MOPS -0.8 N.D. -0.4 -0.1 N.D.
phage P. putida Sci Big MOI 0.1 -0.1 N.D. -0.9 -0.2 N.D.
temperature shift Temperature shift 30_to_25; with MOPS -0.2 N.D. -0.3 -0.6 N.D.
temperature shift Temperature shift 10_to_21; with MOPS -0.6 N.D. -0.2 -0.3 N.D.
carbon source Myristic (C) -0.0 N.D. -0.7 -0.3 N.D.
temperature Growth at 25C; with MOPS -0.8 N.D. -0.2 -0.1 N.D.
stress Growth with Chloride 500 mM; with MOPS -0.6 N.D. -0.3 -0.2 N.D.
carbon source D-Glucose (C); with MOPS -0.8 N.D. -0.1 -0.0 N.D.
nitrogen source Urea (N) -0.4 N.D. -0.3 -0.3 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.2 N.D. -0.7 -0.4 N.D.
carbon source 3-methyl-1-butanol 0.1 vol% (C) -0.4 N.D. -0.5 +0.0 N.D.
carbon source D-Glucose (C) -0.1 N.D. -0.9 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.6 N.D. -0.3 +0.3 N.D.
carbon source carbon source Bisabolol 45 mM -0.2 N.D. -0.6 +0.4 N.D.
pH Growth at pH6 and (C) D-Glucose -0.3 N.D. +0.3 -0.5 N.D.
phage P. putida Sci small MOI 0.1 -0.1 N.D. +0.4 -0.7 N.D.
carbon source carbon source Bisabolene 48.9 mM -0.3 N.D. -0.5 +0.5 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -0.5 +0.3 N.D.
carbon source ferulate (C); with MOPS -0.3 N.D. +0.4 -0.3 N.D.
nitrogen source nitrate (N) -0.6 N.D. +0.4 +0.1 N.D.
carbon source carbon source 3-O-methyl-glucose 50 mM -0.2 N.D. -0.4 +0.6 N.D.
carbon source carbon source D-Glucose 55.5 mM +0.2 N.D. -0.4 +0.5 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.1 N.D. +0.6 -0.3 N.D.
pH pH 7 -0.0 N.D. -0.3 +0.6 N.D.
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.6 N.D. +0.5 +0.3 N.D.
carbon source carbon source Glycerol 108.6 mM +0.2 N.D. -0.4 +0.5 N.D.
mixed community Putida_ML5X with Paraburkholderia sabiae T6SS mutant -0.4 N.D. +0.6 +0.2 N.D.
pH pH 4 +0.3 N.D. -0.4 +0.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.4 N.D. +0.7 +0.1 N.D.
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